Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J04
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55145|ARMET_HUMAN ARMET protein precursor (Arginine-ric... 123 2e-28
sp|Q9CXI5|ARMET_MOUSE ARMET protein precursor 120 7e-28
sp|Q9XZ63|ARMET_DROME ARMET-like protein precursor 111 6e-25
sp|Q9N3B0|ARMET_CAEEL ARMET-like protein precursor 105 4e-23
sp|Q61660|FOXJ1_MOUSE Forkhead box protein J1 (Forkhead-rel... 30 1.7
sp|O74435|CDC31_SCHPO Cell division control protein 31 30 2.3
sp|Q6MEF3|LEPA_PARUW GTP-binding protein lepA 29 3.0
sp|P36049|EBP2_YEAST rRNA-processing protein EBP2 (EBNA1-bi... 29 3.9
sp|Q92I41|DAPF_RICCN Diaminopimelate epimerase (DAP epimerase) 28 5.1
sp|Q9ZDB7|DAPF_RICPR Diaminopimelate epimerase (DAP epimerase) 28 6.6
>sp|P55145|ARMET_HUMAN ARMET protein precursor (Arginine-rich protein)
Length = 179
Score = 123 bits (308), Expect = 2e-28
Identities = 57/91 (62%), Positives = 71/91 (78%)
Frame = +3
Query: 24 LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
+S+PL+ +P EK+CEKLK DSQICELKY+K IDL+ ++L K RVK+LKKIL+ WGE C
Sbjct: 89 VSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETC 148
Query: 204 KGCTEKSDFIRLINEKMPIHDPKAAEQRNKM 296
KGC EKSD+IR INE MP + PKAA R +
Sbjct: 149 KGCAEKSDYIRKINELMPKYAPKAASARTDL 179
>sp|Q9CXI5|ARMET_MOUSE ARMET protein precursor
Length = 179
Score = 120 bits (302), Expect = 7e-28
Identities = 56/91 (61%), Positives = 70/91 (76%)
Frame = +3
Query: 24 LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
+S+PL+ +P EK+CEKLK DSQICELKY+ IDL+ ++L K RVK+LKKIL+ WGE C
Sbjct: 89 VSKPLAHHIPVEKICEKLKKKDSQICELKYDNQIDLSTVDLKKLRVKELKKILDDWGEMC 148
Query: 204 KGCTEKSDFIRLINEKMPIHDPKAAEQRNKM 296
KGC EKSD+IR INE MP + PKAA R +
Sbjct: 149 KGCAEKSDYIRKINELMPKYAPKAASARTDL 179
>sp|Q9XZ63|ARMET_DROME ARMET-like protein precursor
Length = 173
Score = 111 bits (277), Expect = 6e-25
Identities = 49/78 (62%), Positives = 59/78 (75%)
Frame = +3
Query: 24 LSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEEC 203
LS+PLSW MPAEK+CEKLK D+QIC+L+YEK IDL ++L K +V+DLKKIL W E C
Sbjct: 89 LSKPLSWSMPAEKICEKLKKKDAQICDLRYEKQIDLNSVDLKKLKVRDLKKILNDWDESC 148
Query: 204 KGCTEKSDFIRLINEKMP 257
GC EK DFI+ I E P
Sbjct: 149 DGCLEKGDFIKRIEELKP 166
>sp|Q9N3B0|ARMET_CAEEL ARMET-like protein precursor
Length = 168
Score = 105 bits (261), Expect = 4e-23
Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +3
Query: 24 LSQPLSWGMPAEKVC-EKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGEE 200
+++PLSW MP EKVC EKLK D+QICELKY+KP+D I+L K RVK+LK IL WGE
Sbjct: 83 VTKPLSWSMPTEKVCLEKLKGKDAQICELKYDKPLDWKTIDLKKMRVKELKNILGEWGEV 142
Query: 201 CKGCTEKSDFIRLINEKMP 257
CKGCTEK++ I+ I E P
Sbjct: 143 CKGCTEKAELIKRIEELKP 161
>sp|Q61660|FOXJ1_MOUSE Forkhead box protein J1 (Forkhead-related protein FKHL13)
(Hepatocyte nuclear factor 3 forkhead homolog 4) (HFH-4)
Length = 421
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 6 SARGKHLSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTG 137
+ G+H++ P +WG PAE+ + L ++ + + P D +G
Sbjct: 347 TVHGRHINCPATWGPPAEQAADSLDFDETFLATSFLQHPWDESG 390
>sp|O74435|CDC31_SCHPO Cell division control protein 31
Length = 176
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 135 GINLNKARVKDLKKILESWGEECKGCTEKSDFIRLINEKMPIHDP 269
G N K+ V KIL + + KG + DF+R++ EK+ DP
Sbjct: 67 GFNAEKSEVL---KILRDFDKTGKGYLQMEDFVRVMTEKIVERDP 108
>sp|Q6MEF3|LEPA_PARUW GTP-binding protein lepA
Length = 602
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 18 KHLSQPLSWGMPAEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVKDLKKILESWGE 197
++L ++ GM VC K + MD++ L Y P++ + N ++K + K S+
Sbjct: 418 EYLGAIMNLGMDKRGVCTKTETMDARRLLLTYRLPLNEIITDFND-KLKSITKGYGSFDY 476
Query: 198 ECKGCTEKSDFIRL---INEK 251
E C E S+ I+L +NE+
Sbjct: 477 EF-DCYEPSEIIKLEIRVNEE 496
>sp|P36049|EBP2_YEAST rRNA-processing protein EBP2 (EBNA1-binding protein homolog)
Length = 427
Score = 28.9 bits (63), Expect = 3.9
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 54 AEKVCEKLKAMDSQICELKYEKPIDLTGINLNKARVK----DLKKILESWGEECKG-CTE 218
AEK+ LK SQ ELK E+P +T NL K K D+KK + + EE +
Sbjct: 20 AEKLENDLKKKKSQ--ELKKEEPTIVTASNLKKLEKKEKKADVKKEVAADTEEYQSQALS 77
Query: 219 KSDFIRLINEKMPIHDPKAAEQRNKM 296
K + +L E + + A E + M
Sbjct: 78 KKEKRKLKKELKKMQEQDATEAQKHM 103
>sp|Q92I41|DAPF_RICCN Diaminopimelate epimerase (DAP epimerase)
Length = 270
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 45 GMPAEKVCEKLKAMDSQIC-ELKYEKPIDLTGINLNKARVKDLKKILESW 191
G P + KL+ D +I E K + G+N+N A VKD K L W
Sbjct: 154 GNPHVVIFSKLEPQDQKIVGERLQAKELFADGVNVNFAEVKDNKIYLSVW 203
>sp|Q9ZDB7|DAPF_RICPR Diaminopimelate epimerase (DAP epimerase)
Length = 270
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 45 GMPAEKVCEKLKAMDSQICELKYE-KPIDLTGINLNKARVKDLKKILESW 191
G P + KL+ D I K + K + G+N+N A VKD K L W
Sbjct: 154 GNPHLIIFSKLEPQDKTIIGQKLQAKELFADGVNVNFAEVKDNKIYLSVW 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,561,610
Number of Sequences: 369166
Number of extensions: 690562
Number of successful extensions: 2295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2293
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)