Planaria EST Database


DrC_02267

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02267
         (638 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V1C3|UPPP_PROMP  Undecaprenyl-diphosphatase (Undecapren...    32   1.4  
sp|Q8KA15|PRIA_BUCAP  Primosomal protein N' (ATP-dependent h...    30   4.0  
sp|Q9ZTX9|ARFD_ARATH  Auxin response factor 4                      30   5.2  
sp|Q03155|AIDA_ECOLI  Adhesin AIDA-I precursor (AIDA-I autot...    30   5.2  
sp|P47566|AMPP_MYCGE  Putative Xaa-Pro aminopeptidase (X-Pro...    30   6.8  
sp|Q05749|PIT1_MELGA  Pituitary-specific positive transcript...    29   8.9  
sp|P04027|ENV_SRV1  Env polyprotein precursor (Coat polyprot...    29   8.9  
>sp|Q7V1C3|UPPP_PROMP Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
           (Bacitracin resistance protein)
          Length = 266

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
 Frame = +2

Query: 278 LFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVA--LSNGCLIISTVSLSS----NID 439
           L +L   ++ +K++N  N      L     Q  A+   +S     IS   LS     +  
Sbjct: 128 LIMLFADISTKKSINLNNHKYPNNLYIGIAQAFAIVPGVSRSGATISMALLSGWNRKDAA 187

Query: 440 K*SYLCGCDEIRL--FIFSFTSLSQIKIFPFLPCF 538
           K S+L G   I L  F+  F++++Q   FPFLP F
Sbjct: 188 KFSFLLGIPSISLAAFVEFFSAVNQFSTFPFLPLF 222
>sp|Q8KA15|PRIA_BUCAP Primosomal protein N' (ATP-dependent helicase priA) (Replication
           factor Y)
          Length = 720

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -1

Query: 614 HKNQILKREFHDNKSIISIYTKILLKN 534
           ++N ++K++F  NK II I  KIL+KN
Sbjct: 178 YQNYLIKKKFFLNKKIIFIINKILMKN 204
>sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4
          Length = 788

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +2

Query: 68  GVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHSRVNALTIVPKTLGSLNN 247
           G+SPS+  S S  +S S++      S+YS         EL H+    LT +PK       
Sbjct: 36  GISPSSSSSCSSGSSSSSSSTGSASSIYS---------ELWHACAGPLTCLPK------- 79

Query: 248 CALVGNSKGELFIL--DGHLTDQKTLNFQNPI 337
                  KG + +    GHL     +++ +P+
Sbjct: 80  -------KGNVVVYFPQGHLEQDAMVSYSSPL 104
>sp|Q03155|AIDA_ECOLI Adhesin AIDA-I precursor (AIDA-I autotransporter) (AIDA)
          Length = 1286

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 257 VGNSKGELFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVALSNG 397
           VGN++G  ++L G +TD   LN       +Q +SS G+  A  ++ G
Sbjct: 547 VGNNEGREYVLSGGITDGTVLNSGG----LQAVSSGGKASATVINEG 589
>sp|P47566|AMPP_MYCGE Putative Xaa-Pro aminopeptidase (X-Pro aminopeptidase)
           (Aminopeptidase P) (APP) (Aminoacylproline
           aminopeptidase)
          Length = 354

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = +2

Query: 209 LTIVPKTLGSLNNCALVGNSKGELFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVAL 388
           LT  P + G L    ++ ++K +LFI DG   +    NF NPI++V+L  S  Q  A   
Sbjct: 35  LTNFPSSAGWL----IITSNKAKLFI-DGRYYEAAR-NFINPIVEVELFVSFKQVKAFCE 88

Query: 389 SNG 397
           SNG
Sbjct: 89  SNG 91
>sp|Q05749|PIT1_MELGA Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
           hormone factor 1) (GHF-1)
          Length = 370

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/44 (47%), Positives = 24/44 (54%)
 Frame = +2

Query: 65  NGVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHS 196
           NGVS  T +SKS S SCS       L  +  HA   S+C LGHS
Sbjct: 129 NGVS--TLQSKSFSFSCSLT---PCLYKFPEHALSASSCALGHS 167
>sp|P04027|ENV_SRV1 Env polyprotein precursor (Coat polyprotein) [Contains: Coat
           protein GP70; Coat protein GP20]
          Length = 587

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
 Frame = +2

Query: 53  VQWQNGVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHSRVNALTI----- 217
           ++WQ   +P+T     + +  S  + + + SV++   NH   C +G+      T+     
Sbjct: 74  LKWQCVSTPTTASPTHIGSCPSQCNSQSYDSVHATCYNHYQQCTIGNKTYLTATMIRDKS 133

Query: 218 -------VPKTLGSLNNCALVG---NSKGEL 280
                  VP  LG+  N  + G   N KG++
Sbjct: 134 PSSGDGNVPTILGNNQNLIIAGCPENKKGQV 164
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,039,523
Number of Sequences: 369166
Number of extensions: 1308819
Number of successful extensions: 3267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)