Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I17
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7V1C3|UPPP_PROMP Undecaprenyl-diphosphatase (Undecapren... 32 1.4
sp|Q8KA15|PRIA_BUCAP Primosomal protein N' (ATP-dependent h... 30 4.0
sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4 30 5.2
sp|Q03155|AIDA_ECOLI Adhesin AIDA-I precursor (AIDA-I autot... 30 5.2
sp|P47566|AMPP_MYCGE Putative Xaa-Pro aminopeptidase (X-Pro... 30 6.8
sp|Q05749|PIT1_MELGA Pituitary-specific positive transcript... 29 8.9
sp|P04027|ENV_SRV1 Env polyprotein precursor (Coat polyprot... 29 8.9
>sp|Q7V1C3|UPPP_PROMP Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
(Bacitracin resistance protein)
Length = 266
Score = 32.0 bits (71), Expect = 1.4
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Frame = +2
Query: 278 LFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVA--LSNGCLIISTVSLSS----NID 439
L +L ++ +K++N N L Q A+ +S IS LS +
Sbjct: 128 LIMLFADISTKKSINLNNHKYPNNLYIGIAQAFAIVPGVSRSGATISMALLSGWNRKDAA 187
Query: 440 K*SYLCGCDEIRL--FIFSFTSLSQIKIFPFLPCF 538
K S+L G I L F+ F++++Q FPFLP F
Sbjct: 188 KFSFLLGIPSISLAAFVEFFSAVNQFSTFPFLPLF 222
>sp|Q8KA15|PRIA_BUCAP Primosomal protein N' (ATP-dependent helicase priA) (Replication
factor Y)
Length = 720
Score = 30.4 bits (67), Expect = 4.0
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -1
Query: 614 HKNQILKREFHDNKSIISIYTKILLKN 534
++N ++K++F NK II I KIL+KN
Sbjct: 178 YQNYLIKKKFFLNKKIIFIINKILMKN 204
>sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4
Length = 788
Score = 30.0 bits (66), Expect = 5.2
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 68 GVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHSRVNALTIVPKTLGSLNN 247
G+SPS+ S S +S S++ S+YS EL H+ LT +PK
Sbjct: 36 GISPSSSSSCSSGSSSSSSSTGSASSIYS---------ELWHACAGPLTCLPK------- 79
Query: 248 CALVGNSKGELFIL--DGHLTDQKTLNFQNPI 337
KG + + GHL +++ +P+
Sbjct: 80 -------KGNVVVYFPQGHLEQDAMVSYSSPL 104
>sp|Q03155|AIDA_ECOLI Adhesin AIDA-I precursor (AIDA-I autotransporter) (AIDA)
Length = 1286
Score = 30.0 bits (66), Expect = 5.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 257 VGNSKGELFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVALSNG 397
VGN++G ++L G +TD LN +Q +SS G+ A ++ G
Sbjct: 547 VGNNEGREYVLSGGITDGTVLNSGG----LQAVSSGGKASATVINEG 589
>sp|P47566|AMPP_MYCGE Putative Xaa-Pro aminopeptidase (X-Pro aminopeptidase)
(Aminopeptidase P) (APP) (Aminoacylproline
aminopeptidase)
Length = 354
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 209 LTIVPKTLGSLNNCALVGNSKGELFILDGHLTDQKTLNFQNPILDVQLLSSNGQHLAVAL 388
LT P + G L ++ ++K +LFI DG + NF NPI++V+L S Q A
Sbjct: 35 LTNFPSSAGWL----IITSNKAKLFI-DGRYYEAAR-NFINPIVEVELFVSFKQVKAFCE 88
Query: 389 SNG 397
SNG
Sbjct: 89 SNG 91
>sp|Q05749|PIT1_MELGA Pituitary-specific positive transcription factor 1 (Pit-1) (Growth
hormone factor 1) (GHF-1)
Length = 370
Score = 29.3 bits (64), Expect = 8.9
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +2
Query: 65 NGVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHS 196
NGVS T +SKS S SCS L + HA S+C LGHS
Sbjct: 129 NGVS--TLQSKSFSFSCSLT---PCLYKFPEHALSASSCALGHS 167
>sp|P04027|ENV_SRV1 Env polyprotein precursor (Coat polyprotein) [Contains: Coat
protein GP70; Coat protein GP20]
Length = 587
Score = 29.3 bits (64), Expect = 8.9
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Frame = +2
Query: 53 VQWQNGVSPSTDKSKSLSASCSANHPKQFLSVYSLHANHISTCELGHSRVNALTI----- 217
++WQ +P+T + + S + + + SV++ NH C +G+ T+
Sbjct: 74 LKWQCVSTPTTASPTHIGSCPSQCNSQSYDSVHATCYNHYQQCTIGNKTYLTATMIRDKS 133
Query: 218 -------VPKTLGSLNNCALVG---NSKGEL 280
VP LG+ N + G N KG++
Sbjct: 134 PSSGDGNVPTILGNNQNLIIAGCPENKKGQV 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,039,523
Number of Sequences: 369166
Number of extensions: 1308819
Number of successful extensions: 3267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)