Planaria EST Database


DrC_02265

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02265
         (405 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03315|POLS_SFV  Structural polyprotein (P130) [Contains:...    30   2.4  
sp|P34855|NU5M_APILI  NADH-ubiquinone oxidoreductase chain 5...    29   4.1  
sp|P08491|POLS_RRVT  Structural polyprotein (P130) [Contains...    28   5.3  
sp|Q9J540|RPO4_FOWPV  DNA-directed RNA polymerase 35 kDa pol...    28   7.0  
sp|Q89AT1|CVPA_BUCBP  Colicin V production protein homolog         28   7.0  
sp|P57169|CCA_BUCAI  CCA-adding enzyme (tRNA nucleotidyltran...    28   9.1  
>sp|P03315|POLS_SFV Structural polyprotein (P130) [Contains: Coat protein C (Capsid
            protein C); Spike glycoprotein E3; Spike glycoprotein E2;
            6 kDa peptide; Spike glycoprotein E1]
          Length = 1253

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 238  NSSNHECLSVFLPRSSSVSRHKHASAYHNHTACI 137
            +S N +    ++ RS  V RH HASAY  HTA +
Sbjct: 912  DSENTQLSEAYVDRSD-VCRHDHASAYKAHTASL 944
>sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 554

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 295 GVNVLMFYFPIVYFMLFSS---NFNFYHLI*LFNKM 393
           G+N+LM Y  +V+ M+       FNFY LI L NK+
Sbjct: 438 GINLLMIYKLMVFKMIMVGLIMGFNFYKLILLNNKI 473
>sp|P08491|POLS_RRVT Structural polyprotein (P130) [Contains: Coat protein C (Capsid
            protein C); Spike glycoprotein E3; Spike glycoprotein E2;
            6 kDa peptide; Spike glycoprotein E1]
          Length = 1254

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 238  NSSNHECLSVFLPRSSSVSRHKHASAYHNHTACI 137
            +S N +    ++ RS  V +H HASAY  HTA +
Sbjct: 913  DSENTQLSEAYVDRSD-VCKHDHASAYKAHTASL 945
>sp|Q9J540|RPO4_FOWPV DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 302

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 195 DLGRNTDKHS*FELFSLTIMLNDITIYLFRSIFGCKC 305
           D+ ++T   S ++  S  + +NDIT     + FGC+C
Sbjct: 232 DMEKDTPTSSAYDPKSNIVFVNDITTMCIINFFGCEC 268
>sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog
          Length = 161

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 231 ELFSLTIMLNDITI----YLFRSIFGCKCVNVLFSNRLFYVIFFQF*FLSFDLI 380
           EL S+ I +  + +    Y F SIF     N+   N + Y++FF F FL F  I
Sbjct: 27  ELSSIFIWIVGVCVFFRYYSFFSIFSTYVRNIFLKNIISYIVFFVF-FLFFKSI 79
>sp|P57169|CCA_BUCAI CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
           adenylyl-/cytidylyl- transferase) (tRNA
           CCA-pyrophosphorylase) (tRNA-NT)
          Length = 414

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 PSIYSEASSGVNVLMFYFPIVYFMLFSSNF 357
           P +Y +     N L F+FP +YF+    NF
Sbjct: 190 PHVYFQVLYECNALHFFFPEMYFLYEKKNF 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,757,082
Number of Sequences: 369166
Number of extensions: 714446
Number of successful extensions: 1491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)