Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I14
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P03315|POLS_SFV Structural polyprotein (P130) [Contains:... 30 2.4
sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5... 29 4.1
sp|P08491|POLS_RRVT Structural polyprotein (P130) [Contains... 28 5.3
sp|Q9J540|RPO4_FOWPV DNA-directed RNA polymerase 35 kDa pol... 28 7.0
sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog 28 7.0
sp|P57169|CCA_BUCAI CCA-adding enzyme (tRNA nucleotidyltran... 28 9.1
>sp|P03315|POLS_SFV Structural polyprotein (P130) [Contains: Coat protein C (Capsid
protein C); Spike glycoprotein E3; Spike glycoprotein E2;
6 kDa peptide; Spike glycoprotein E1]
Length = 1253
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 238 NSSNHECLSVFLPRSSSVSRHKHASAYHNHTACI 137
+S N + ++ RS V RH HASAY HTA +
Sbjct: 912 DSENTQLSEAYVDRSD-VCRHDHASAYKAHTASL 944
>sp|P34855|NU5M_APILI NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 554
Score = 28.9 bits (63), Expect = 4.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 295 GVNVLMFYFPIVYFMLFSS---NFNFYHLI*LFNKM 393
G+N+LM Y +V+ M+ FNFY LI L NK+
Sbjct: 438 GINLLMIYKLMVFKMIMVGLIMGFNFYKLILLNNKI 473
>sp|P08491|POLS_RRVT Structural polyprotein (P130) [Contains: Coat protein C (Capsid
protein C); Spike glycoprotein E3; Spike glycoprotein E2;
6 kDa peptide; Spike glycoprotein E1]
Length = 1254
Score = 28.5 bits (62), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 238 NSSNHECLSVFLPRSSSVSRHKHASAYHNHTACI 137
+S N + ++ RS V +H HASAY HTA +
Sbjct: 913 DSENTQLSEAYVDRSD-VCKHDHASAYKAHTASL 945
>sp|Q9J540|RPO4_FOWPV DNA-directed RNA polymerase 35 kDa polypeptide
Length = 302
Score = 28.1 bits (61), Expect = 7.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 195 DLGRNTDKHS*FELFSLTIMLNDITIYLFRSIFGCKC 305
D+ ++T S ++ S + +NDIT + FGC+C
Sbjct: 232 DMEKDTPTSSAYDPKSNIVFVNDITTMCIINFFGCEC 268
>sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog
Length = 161
Score = 28.1 bits (61), Expect = 7.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +3
Query: 231 ELFSLTIMLNDITI----YLFRSIFGCKCVNVLFSNRLFYVIFFQF*FLSFDLI 380
EL S+ I + + + Y F SIF N+ N + Y++FF F FL F I
Sbjct: 27 ELSSIFIWIVGVCVFFRYYSFFSIFSTYVRNIFLKNIISYIVFFVF-FLFFKSI 79
>sp|P57169|CCA_BUCAI CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT)
Length = 414
Score = 27.7 bits (60), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 268 PSIYSEASSGVNVLMFYFPIVYFMLFSSNF 357
P +Y + N L F+FP +YF+ NF
Sbjct: 190 PHVYFQVLYECNALHFFFPEMYFLYEKKNF 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,757,082
Number of Sequences: 369166
Number of extensions: 714446
Number of successful extensions: 1491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)