Planaria EST Database


DrC_02264

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02264
         (864 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47048|YJE9_YEAST  Hypothetical 52.8 kDa protein in MTR4-...    38   0.042
sp|Q15545|TAF7_HUMAN  Transcription initiation factor TFIID ...    36   0.16 
sp|P05059|CMGA_BOVIN  Chromogranin A precursor (CgA) (Pituit...    35   0.35 
sp|P04933|MSP1_PLAFW  Merozoite surface protein 1 precursor ...    34   0.46 
sp|P04932|MSP1_PLAFK  Merozoite surface protein 1 precursor ...    34   0.46 
sp|Q8BHB9|CLIC6_MOUSE  Chloride intracellular channel 6            34   0.60 
sp|Q9ULX6|AKP8L_HUMAN  A-kinase anchor protein-like protein ...    34   0.60 
sp|Q6BSE2|ORC1_DEBHA  Origin recognition complex subunit 1         33   1.3  
sp|Q12019|MDN1_YEAST  Midasin (MIDAS-containing protein)           33   1.3  
sp|P07334|CDR1_SCHPO  Mitosis inducer protein kinase cdr1 (P...    32   1.8  
>sp|P47048|YJE9_YEAST Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic region
          Length = 450

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 28/84 (33%), Positives = 41/84 (48%)
 Frame = +2

Query: 569 IDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSL 748
           ++DLLD  K      HDR EE     + DLL   NK  +E+A+   E+   QL+     L
Sbjct: 343 VEDLLDEIKEG----HDRTEE-----VNDLLAHYNKGQDEEAEEEIERELEQLE-----L 388

Query: 749 NQKETGNTKNKLQDTHDKPKKDGE 820
           ++K     +NK QD H+  +   E
Sbjct: 389 DEKNNNKEENKNQDLHEPKESSSE 412
>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 (Transcription
           initiation factor TFIID 55 kDa subunit) (TAF(II)55)
           (TAFII-55) (TAFII55)
          Length = 349

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +2

Query: 563 QIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGN 742
           +I +DL  S++++ + +H + EED  I+I D  ED  +   +K   + E+   Q     N
Sbjct: 221 EIFNDLSSSSEDEDETQH-QDEED--INIIDTEEDLERQLQDKLNESDEQH--QENEGTN 275

Query: 743 SLN---QKETGNTKNKLQDTHDKPKKDGEI 823
            L    QK+  N K KLQ+T D+ K+  ++
Sbjct: 276 QLVMGIQKQIDNMKGKLQETQDRAKRQEDL 305
>sp|P05059|CMGA_BOVIN Chromogranin A precursor (CgA) (Pituitary secretory protein I)
           (SP-I) [Contains: Vasostatin-1; Chromostatin; Chromacin;
           Pancreastatin; WE-14; Catestatin]
          Length = 449

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
 Frame = +2

Query: 347 PIKREKLEGISGDDKELIISLIFNLIDEIIDMLTKYSKSNV----KYDSINSKLDSILSG 514
           P+ +E  E + GD++ L I    NL+ E+ D+  + +K       K+ S   +L  +L  
Sbjct: 51  PVSKECFETLRGDERILSILRHQNLLKELQDLALQGAKERTHQQKKHSSYEDELSEVLE- 109

Query: 515 KPS-----LEGGKPFDASFAFQIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKT 679
           KP+      E  +   +  A +  DD  +  K+D     DRP+    +     +E+ N+ 
Sbjct: 110 KPNDQAEPKEVTEEVSSKDAAEKRDDFKEVEKSDEDSDGDRPQASPGLGPGPKVEEDNQA 169

Query: 680 -GNEKAKPA 703
            G E+  P+
Sbjct: 170 PGEEEEAPS 178
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
           (PMMSA) (P195)
          Length = 1639

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
 Frame = +2

Query: 239 LVTLYKTFNKLFVKDSFHXXXXXXXXXXXXXXXXXFPIKREKLEGISGDDKELI---ISL 409
           L+  Y+  N+L  K +F+                 F + R KL  +  +D   I   + +
Sbjct: 167 LIDGYEEINELLYKLNFY-----------------FDLLRAKLNDVCANDYCQIPFNLKI 209

Query: 410 IFNLIDEIIDMLTKYSK--SNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLL 583
             N +D +  ++  Y K   N+K D++    D I   K ++E         + + ID   
Sbjct: 210 RANELDVLKKLVFGYRKPLDNIK-DNVGKMEDYIKKNKKTIENINELIEE-SKKTIDKNK 267

Query: 584 DSTKNDSKLRHDRPEEDKIISIYDL-LEDGNKT------------GNEKAKPAPEK-GEI 721
           ++TK + K +  + + D  +SIY+  LE+ +               NE  K   +K  EI
Sbjct: 268 NATKEEEKKKLYQAQYD--LSIYNKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEI 325

Query: 722 QLKPPGNSLNQKETGNTKNKLQDTHDKPKKD 814
           +  PP NS N   T   KNK  + H+K  K+
Sbjct: 326 KNPPPANSGNTPNTLLDKNKKIEEHEKEIKE 356
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor (Merozoite surface antigens)
           (PMMSA) (P190)
          Length = 1630

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
 Frame = +2

Query: 239 LVTLYKTFNKLFVKDSFHXXXXXXXXXXXXXXXXXFPIKREKLEGISGDDKELI---ISL 409
           L+  Y+  N+L  K +F+                 F + R KL  +  +D   I   + +
Sbjct: 158 LIDGYEEINELLYKLNFY-----------------FDLLRAKLNDVCANDYCQIPFNLKI 200

Query: 410 IFNLIDEIIDMLTKYSK--SNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLL 583
             N +D +  ++  Y K   N+K D++    D I   K ++E         + + ID   
Sbjct: 201 RANELDVLKKLVFGYRKPLDNIK-DNVGKMEDYIKKNKKTIENINELIEE-SKKTIDKNK 258

Query: 584 DSTKNDSKLRHDRPEEDKIISIYDL-LEDGNKT------------GNEKAKPAPEK-GEI 721
           ++TK + K +  + + D  +SIY+  LE+ +               NE  K   +K  EI
Sbjct: 259 NATKEEEKKKLYQAQYD--LSIYNKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEI 316

Query: 722 QLKPPGNSLNQKETGNTKNKLQDTHDKPKKD 814
           +  PP NS N   T   KNK  + H+K  K+
Sbjct: 317 KNPPPANSGNTPNTLLDKNKKIEEHEKEIKE 347
>sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel 6
          Length = 596

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
 Frame = +2

Query: 674 KTGNEKAKPAPE-----KGEIQLKPPGNSLNQKETGNTKNK 781
           +TG E+A+P PE     +G IQ KPP  SL+ +E  +T+++
Sbjct: 276 ETGEEEARPEPELKGPCEGAIQEKPPDGSLDGEEAKSTEHE 316
>sp|Q9ULX6|AKP8L_HUMAN A-kinase anchor protein-like protein 8 (Neighbor of A-kinase
           anchoring protein 95) (Homologous to AKAP95 protein)
           (HA95) (Helicase A-binding protein 95) (HAP95)
          Length = 646

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 662 EDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQ---DTHDKPKK 811
           E+G + G E+ K  PEKG +          Q E G TK KLQ    + DK KK
Sbjct: 333 EEGKEDGREEGKEDPEKGAL--------TTQDENGQTKRKLQAGKKSQDKQKK 377
>sp|Q6BSE2|ORC1_DEBHA Origin recognition complex subunit 1
          Length = 810

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
 Frame = +2

Query: 455 SKSNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLLDSTKNDSKLR------- 613
           +K++ K  SI  KLD +       E  KP   + + QI+D+  +   NDS          
Sbjct: 215 NKTHDKSKSIKDKLDEV-------ETKKPKQKTVSKQILDE--EEENNDSSDEFESAIDL 265

Query: 614 HDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQDT 793
            D P  D++ S  D  E  NK        +P K +  LKP      QK       K+ + 
Sbjct: 266 QDEPSSDELESDEDASESKNK--------SPRKRKASLKPKAVKEKQKRV-----KIPNN 312

Query: 794 HDK 802
           H K
Sbjct: 313 HSK 315
>sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein)
          Length = 4910

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 476  DSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLLDSTKN---DSKLRHDRPEEDKIIS 646
            + ++ ++D +    P+    K +D        D   D++K    D  L     EED   +
Sbjct: 4138 EELDEEIDDLNEDDPNAIDDKMWD--------DKASDNSKEKDTDQNLDGKNQEEDVQAA 4189

Query: 647  IYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQD 790
              D  +  NK G ++   APE G+ +++   N+  + + G  +++++D
Sbjct: 4190 ENDEQQRDNKEGGDEDPNAPEDGDEEIENDENAEEENDVGEQEDEVKD 4237
>sp|P07334|CDR1_SCHPO Mitosis inducer protein kinase cdr1 (Protein kinase nim1)
          Length = 593

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 545 DASFAFQIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGN 673
           D  + ++++ ++L     D  L+  R +E+K +S+YDL+ D N
Sbjct: 313 DEKYVYKVLSEIL----RDDMLKKQRFDENKYLSLYDLIHDNN 351
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,023,307
Number of Sequences: 369166
Number of extensions: 1458556
Number of successful extensions: 4459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4447
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)