Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H22
(864 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47048|YJE9_YEAST Hypothetical 52.8 kDa protein in MTR4-... 38 0.042
sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID ... 36 0.16
sp|P05059|CMGA_BOVIN Chromogranin A precursor (CgA) (Pituit... 35 0.35
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 34 0.46
sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor ... 34 0.46
sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel 6 34 0.60
sp|Q9ULX6|AKP8L_HUMAN A-kinase anchor protein-like protein ... 34 0.60
sp|Q6BSE2|ORC1_DEBHA Origin recognition complex subunit 1 33 1.3
sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein) 33 1.3
sp|P07334|CDR1_SCHPO Mitosis inducer protein kinase cdr1 (P... 32 1.8
>sp|P47048|YJE9_YEAST Hypothetical 52.8 kDa protein in MTR4-GYP6 intergenic region
Length = 450
Score = 37.7 bits (86), Expect = 0.042
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +2
Query: 569 IDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSL 748
++DLLD K HDR EE + DLL NK +E+A+ E+ QL+ L
Sbjct: 343 VEDLLDEIKEG----HDRTEE-----VNDLLAHYNKGQDEEAEEEIERELEQLE-----L 388
Query: 749 NQKETGNTKNKLQDTHDKPKKDGE 820
++K +NK QD H+ + E
Sbjct: 389 DEKNNNKEENKNQDLHEPKESSSE 412
>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 (Transcription
initiation factor TFIID 55 kDa subunit) (TAF(II)55)
(TAFII-55) (TAFII55)
Length = 349
Score = 35.8 bits (81), Expect = 0.16
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +2
Query: 563 QIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGN 742
+I +DL S++++ + +H + EED I+I D ED + +K + E+ Q N
Sbjct: 221 EIFNDLSSSSEDEDETQH-QDEED--INIIDTEEDLERQLQDKLNESDEQH--QENEGTN 275
Query: 743 SLN---QKETGNTKNKLQDTHDKPKKDGEI 823
L QK+ N K KLQ+T D+ K+ ++
Sbjct: 276 QLVMGIQKQIDNMKGKLQETQDRAKRQEDL 305
>sp|P05059|CMGA_BOVIN Chromogranin A precursor (CgA) (Pituitary secretory protein I)
(SP-I) [Contains: Vasostatin-1; Chromostatin; Chromacin;
Pancreastatin; WE-14; Catestatin]
Length = 449
Score = 34.7 bits (78), Expect = 0.35
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Frame = +2
Query: 347 PIKREKLEGISGDDKELIISLIFNLIDEIIDMLTKYSKSNV----KYDSINSKLDSILSG 514
P+ +E E + GD++ L I NL+ E+ D+ + +K K+ S +L +L
Sbjct: 51 PVSKECFETLRGDERILSILRHQNLLKELQDLALQGAKERTHQQKKHSSYEDELSEVLE- 109
Query: 515 KPS-----LEGGKPFDASFAFQIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGNKT 679
KP+ E + + A + DD + K+D DRP+ + +E+ N+
Sbjct: 110 KPNDQAEPKEVTEEVSSKDAAEKRDDFKEVEKSDEDSDGDRPQASPGLGPGPKVEEDNQA 169
Query: 680 -GNEKAKPA 703
G E+ P+
Sbjct: 170 PGEEEEAPS 178
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 34.3 bits (77), Expect = 0.46
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Frame = +2
Query: 239 LVTLYKTFNKLFVKDSFHXXXXXXXXXXXXXXXXXFPIKREKLEGISGDDKELI---ISL 409
L+ Y+ N+L K +F+ F + R KL + +D I + +
Sbjct: 167 LIDGYEEINELLYKLNFY-----------------FDLLRAKLNDVCANDYCQIPFNLKI 209
Query: 410 IFNLIDEIIDMLTKYSK--SNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLL 583
N +D + ++ Y K N+K D++ D I K ++E + + ID
Sbjct: 210 RANELDVLKKLVFGYRKPLDNIK-DNVGKMEDYIKKNKKTIENINELIEE-SKKTIDKNK 267
Query: 584 DSTKNDSKLRHDRPEEDKIISIYDL-LEDGNKT------------GNEKAKPAPEK-GEI 721
++TK + K + + + D +SIY+ LE+ + NE K +K EI
Sbjct: 268 NATKEEEKKKLYQAQYD--LSIYNKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEI 325
Query: 722 QLKPPGNSLNQKETGNTKNKLQDTHDKPKKD 814
+ PP NS N T KNK + H+K K+
Sbjct: 326 KNPPPANSGNTPNTLLDKNKKIEEHEKEIKE 356
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1630
Score = 34.3 bits (77), Expect = 0.46
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Frame = +2
Query: 239 LVTLYKTFNKLFVKDSFHXXXXXXXXXXXXXXXXXFPIKREKLEGISGDDKELI---ISL 409
L+ Y+ N+L K +F+ F + R KL + +D I + +
Sbjct: 158 LIDGYEEINELLYKLNFY-----------------FDLLRAKLNDVCANDYCQIPFNLKI 200
Query: 410 IFNLIDEIIDMLTKYSK--SNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLL 583
N +D + ++ Y K N+K D++ D I K ++E + + ID
Sbjct: 201 RANELDVLKKLVFGYRKPLDNIK-DNVGKMEDYIKKNKKTIENINELIEE-SKKTIDKNK 258
Query: 584 DSTKNDSKLRHDRPEEDKIISIYDL-LEDGNKT------------GNEKAKPAPEK-GEI 721
++TK + K + + + D +SIY+ LE+ + NE K +K EI
Sbjct: 259 NATKEEEKKKLYQAQYD--LSIYNKQLEEAHNLISVLEKRIDTLKKNENIKELLDKINEI 316
Query: 722 QLKPPGNSLNQKETGNTKNKLQDTHDKPKKD 814
+ PP NS N T KNK + H+K K+
Sbjct: 317 KNPPPANSGNTPNTLLDKNKKIEEHEKEIKE 347
>sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel 6
Length = 596
Score = 33.9 bits (76), Expect = 0.60
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Frame = +2
Query: 674 KTGNEKAKPAPE-----KGEIQLKPPGNSLNQKETGNTKNK 781
+TG E+A+P PE +G IQ KPP SL+ +E +T+++
Sbjct: 276 ETGEEEARPEPELKGPCEGAIQEKPPDGSLDGEEAKSTEHE 316
>sp|Q9ULX6|AKP8L_HUMAN A-kinase anchor protein-like protein 8 (Neighbor of A-kinase
anchoring protein 95) (Homologous to AKAP95 protein)
(HA95) (Helicase A-binding protein 95) (HAP95)
Length = 646
Score = 33.9 bits (76), Expect = 0.60
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 662 EDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQ---DTHDKPKK 811
E+G + G E+ K PEKG + Q E G TK KLQ + DK KK
Sbjct: 333 EEGKEDGREEGKEDPEKGAL--------TTQDENGQTKRKLQAGKKSQDKQKK 377
>sp|Q6BSE2|ORC1_DEBHA Origin recognition complex subunit 1
Length = 810
Score = 32.7 bits (73), Expect = 1.3
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Frame = +2
Query: 455 SKSNVKYDSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLLDSTKNDSKLR------- 613
+K++ K SI KLD + E KP + + QI+D+ + NDS
Sbjct: 215 NKTHDKSKSIKDKLDEV-------ETKKPKQKTVSKQILDE--EEENNDSSDEFESAIDL 265
Query: 614 HDRPEEDKIISIYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQDT 793
D P D++ S D E NK +P K + LKP QK K+ +
Sbjct: 266 QDEPSSDELESDEDASESKNK--------SPRKRKASLKPKAVKEKQKRV-----KIPNN 312
Query: 794 HDK 802
H K
Sbjct: 313 HSK 315
>sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein)
Length = 4910
Score = 32.7 bits (73), Expect = 1.3
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +2
Query: 476 DSINSKLDSILSGKPSLEGGKPFDASFAFQIIDDLLDSTKN---DSKLRHDRPEEDKIIS 646
+ ++ ++D + P+ K +D D D++K D L EED +
Sbjct: 4138 EELDEEIDDLNEDDPNAIDDKMWD--------DKASDNSKEKDTDQNLDGKNQEEDVQAA 4189
Query: 647 IYDLLEDGNKTGNEKAKPAPEKGEIQLKPPGNSLNQKETGNTKNKLQD 790
D + NK G ++ APE G+ +++ N+ + + G +++++D
Sbjct: 4190 ENDEQQRDNKEGGDEDPNAPEDGDEEIENDENAEEENDVGEQEDEVKD 4237
>sp|P07334|CDR1_SCHPO Mitosis inducer protein kinase cdr1 (Protein kinase nim1)
Length = 593
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 545 DASFAFQIIDDLLDSTKNDSKLRHDRPEEDKIISIYDLLEDGN 673
D + ++++ ++L D L+ R +E+K +S+YDL+ D N
Sbjct: 313 DEKYVYKVLSEIL----RDDMLKKQRFDENKYLSLYDLIHDNN 351
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,023,307
Number of Sequences: 369166
Number of extensions: 1458556
Number of successful extensions: 4459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4447
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)