Planaria EST Database


DrC_02263

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02263
         (901 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13263|TIF1B_HUMAN  Transcription intermediary factor 1-b...    32   2.4  
sp|Q62318|TIF1B_MOUSE  Transcription intermediary factor 1-b...    32   3.2  
sp|Q57993|Y573_METJA  Hypothetical protein MJ0573                  32   3.2  
sp|P03303|POLG_HRV14  Genome polyprotein [Contains: Coat pro...    31   5.4  
sp|P47359|SYN_MYCGE  Asparaginyl-tRNA synthetase (Asparagine...    30   7.0  
sp|P51849|PDC3_ORYSA  Pyruvate decarboxylase isozyme 3 (PDC)       30   7.0  
sp|P22817|IDE_DROME  Insulin-degrading enzyme (Insulysin) (I...    30   9.2  
>sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta (TIF1-beta) (Tripartite
           motif protein 28) (Nuclear corepressor KAP-1)
           (KRAB-associated protein 1) (KAP-1) (KRAB-interacting
           protein 1) (KRIP-1) (RING finger protein 96)
          Length = 835

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 8/150 (5%)
 Frame = +2

Query: 41  YDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDCKLFLYELKRTKIQLVXX 220
           Y   E    N+R+ + SLV  +    D  ATL+K+ +E+R   +      KR ++ +   
Sbjct: 242 YQFLEDAVRNQRKLLASLVKRLG---DKHATLQKSTKEVRSSIRQVSDVQKRVQVDV--K 296

Query: 221 XXXAEVLKNKLK--------LSKIRELALMQSNRMLPDIVKTYADREAVLMVSWWILQRS 376
               +++K   K          K+ E    +  R    + K    +E +L  + W L+  
Sbjct: 297 MAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESD 356

Query: 377 GSKGRKTKEYFIFV*STRAMRRIVQNAIPH 466
            +      +  I+    RA++ IV    PH
Sbjct: 357 NNTALLLSKKLIYFQLHRALKMIVDPVEPH 386
>sp|Q62318|TIF1B_MOUSE Transcription intermediary factor 1-beta (TIF1-beta) (Tripartite
           motif protein 28) (KRAB-A interacting protein) (KRIP-1)
          Length = 834

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
 Frame = +2

Query: 41  YDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDCKLFLYELKRTKIQLVXX 220
           Y   E    N+R+ + SLV  +    D  ATL+K  +E+R   +      KR ++ +   
Sbjct: 243 YQFLEDAVRNQRKLLASLVKRLG---DKHATLQKNTKEVRSSIRQVSDVQKRVQVDV--K 297

Query: 221 XXXAEVLKNKLK--------LSKIRELALMQSNRMLPDIVKTYADREAVLMVSWWILQRS 376
               +++K   K          K+ E    +  R    + K    +E +L  + W L+  
Sbjct: 298 MAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESD 357

Query: 377 GSKGRKTKEYFIFV*STRAMRRIVQNAIPH 466
            +      +  I+    RA++ IV    PH
Sbjct: 358 NNTALLLSKKLIYFQLHRALKMIVDPVEPH 387
>sp|Q57993|Y573_METJA Hypothetical protein MJ0573
          Length = 189

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 664 ESASEKMELEIYVMI-GDIIKKLLQKSHLSEPRKLLIQNCLSC 789
           E   +K+ + IYV + GDI K+ L+K  L   +K LI N +SC
Sbjct: 138 EGKIKKVIINIYVKVDGDIDKEKLKKLVLEGSKKCLISNSISC 180
>sp|P03303|POLG_HRV14 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (Core protein P2A); Core protein P2B;
            Core protein P2C; Core protein P3A; Genome-linked protein
            VPg (P3B); Picornain 3C (Protease 3C) (P3C); RNA-directed
            RNA polymerase (P3D)]
          Length = 2179

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +1

Query: 595  SRSLTNFARRTNYLVQFLTSKIMESASEKMELEIYVMIGDIIKKLLQKSHLSEP----RK 762
            ++ L   A + + L++++ +K++  A EK+E    +   DI+++ +   H+S P    R+
Sbjct: 1115 AKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILERQITTMHISNPTQEKRE 1174

Query: 763  LLIQNCL 783
             L  N L
Sbjct: 1175 QLFNNVL 1181
>sp|P47359|SYN_MYCGE Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
          Length = 456

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +1

Query: 634 LVQFLTSKIMESASEKMELEIYVMIGDIIKKLLQKSHLSEPRKLLIQNCLSCVYLALTTS 813
           L++FL  K+ME+AS+++ +       DII  L  K+ +S  +  +I+   +   L  ++ 
Sbjct: 252 LIKFLIKKVMENASDELNVLAKQFSNDIISNL--KTIISTKKFPIIEYSKALAILKESSD 309

Query: 814 KRKTRSEFS 840
            +KT  E +
Sbjct: 310 TKKTNFELN 318
>sp|P51849|PDC3_ORYSA Pyruvate decarboxylase isozyme 3 (PDC)
          Length = 585

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 185 HTGITCNLLSIPH-SFSQELPPYLRIGLSPTLMNQ 84
           +  ++CNL ++PH +FS++  PY    LSP L NQ
Sbjct: 184 YISVSCNLAAVPHPTFSRDPVPYF---LSPRLSNQ 215
>sp|P22817|IDE_DROME Insulin-degrading enzyme (Insulysin) (Insulinase) (Insulin
           protease)
          Length = 990

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
 Frame = +2

Query: 29  GNGFYDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDC-KL----FLYELK 193
           G GF+D+   L +   E +D +V  + Q+L+M    E   + +  +C KL    F ++ K
Sbjct: 342 GFGFFDIVVDLTQEGLEHVDDIVKIVFQYLEMLRK-EGPKKWIFDECVKLNEMRFRFKEK 400

Query: 194 RTKIQLVXXXXXAEVLKNKLKLSKIRE--LALMQSNRMLPDIVKTYAD 331
                LV          + +K+  + E  +A   SN   PD++K   D
Sbjct: 401 EESENLVTHAV------SSMKIFPLEEVLIAPYLSNEWSPDLIKGLLD 442
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,279,449
Number of Sequences: 369166
Number of extensions: 1795704
Number of successful extensions: 4894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)