Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H18
(901 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-b... 32 2.4
sp|Q62318|TIF1B_MOUSE Transcription intermediary factor 1-b... 32 3.2
sp|Q57993|Y573_METJA Hypothetical protein MJ0573 32 3.2
sp|P03303|POLG_HRV14 Genome polyprotein [Contains: Coat pro... 31 5.4
sp|P47359|SYN_MYCGE Asparaginyl-tRNA synthetase (Asparagine... 30 7.0
sp|P51849|PDC3_ORYSA Pyruvate decarboxylase isozyme 3 (PDC) 30 7.0
sp|P22817|IDE_DROME Insulin-degrading enzyme (Insulysin) (I... 30 9.2
>sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta (TIF1-beta) (Tripartite
motif protein 28) (Nuclear corepressor KAP-1)
(KRAB-associated protein 1) (KAP-1) (KRAB-interacting
protein 1) (KRIP-1) (RING finger protein 96)
Length = 835
Score = 32.0 bits (71), Expect = 2.4
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 8/150 (5%)
Frame = +2
Query: 41 YDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDCKLFLYELKRTKIQLVXX 220
Y E N+R+ + SLV + D ATL+K+ +E+R + KR ++ +
Sbjct: 242 YQFLEDAVRNQRKLLASLVKRLG---DKHATLQKSTKEVRSSIRQVSDVQKRVQVDV--K 296
Query: 221 XXXAEVLKNKLK--------LSKIRELALMQSNRMLPDIVKTYADREAVLMVSWWILQRS 376
+++K K K+ E + R + K +E +L + W L+
Sbjct: 297 MAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESD 356
Query: 377 GSKGRKTKEYFIFV*STRAMRRIVQNAIPH 466
+ + I+ RA++ IV PH
Sbjct: 357 NNTALLLSKKLIYFQLHRALKMIVDPVEPH 386
>sp|Q62318|TIF1B_MOUSE Transcription intermediary factor 1-beta (TIF1-beta) (Tripartite
motif protein 28) (KRAB-A interacting protein) (KRIP-1)
Length = 834
Score = 31.6 bits (70), Expect = 3.2
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Frame = +2
Query: 41 YDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDCKLFLYELKRTKIQLVXX 220
Y E N+R+ + SLV + D ATL+K +E+R + KR ++ +
Sbjct: 243 YQFLEDAVRNQRKLLASLVKRLG---DKHATLQKNTKEVRSSIRQVSDVQKRVQVDV--K 297
Query: 221 XXXAEVLKNKLK--------LSKIRELALMQSNRMLPDIVKTYADREAVLMVSWWILQRS 376
+++K K K+ E + R + K +E +L + W L+
Sbjct: 298 MAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESD 357
Query: 377 GSKGRKTKEYFIFV*STRAMRRIVQNAIPH 466
+ + I+ RA++ IV PH
Sbjct: 358 NNTALLLSKKLIYFQLHRALKMIVDPVEPH 387
>sp|Q57993|Y573_METJA Hypothetical protein MJ0573
Length = 189
Score = 31.6 bits (70), Expect = 3.2
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 664 ESASEKMELEIYVMI-GDIIKKLLQKSHLSEPRKLLIQNCLSC 789
E +K+ + IYV + GDI K+ L+K L +K LI N +SC
Sbjct: 138 EGKIKKVIINIYVKVDGDIDKEKLKKLVLEGSKKCLISNSISC 180
>sp|P03303|POLG_HRV14 Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
(P1D); Picornain 2A (Core protein P2A); Core protein P2B;
Core protein P2C; Core protein P3A; Genome-linked protein
VPg (P3B); Picornain 3C (Protease 3C) (P3C); RNA-directed
RNA polymerase (P3D)]
Length = 2179
Score = 30.8 bits (68), Expect = 5.4
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 595 SRSLTNFARRTNYLVQFLTSKIMESASEKMELEIYVMIGDIIKKLLQKSHLSEP----RK 762
++ L A + + L++++ +K++ A EK+E + DI+++ + H+S P R+
Sbjct: 1115 AKGLEWIANKISKLIEWIKNKVLPQAKEKLEFCSKLKQLDILERQITTMHISNPTQEKRE 1174
Query: 763 LLIQNCL 783
L N L
Sbjct: 1175 QLFNNVL 1181
>sp|P47359|SYN_MYCGE Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
Length = 456
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +1
Query: 634 LVQFLTSKIMESASEKMELEIYVMIGDIIKKLLQKSHLSEPRKLLIQNCLSCVYLALTTS 813
L++FL K+ME+AS+++ + DII L K+ +S + +I+ + L ++
Sbjct: 252 LIKFLIKKVMENASDELNVLAKQFSNDIISNL--KTIISTKKFPIIEYSKALAILKESSD 309
Query: 814 KRKTRSEFS 840
+KT E +
Sbjct: 310 TKKTNFELN 318
>sp|P51849|PDC3_ORYSA Pyruvate decarboxylase isozyme 3 (PDC)
Length = 585
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 185 HTGITCNLLSIPH-SFSQELPPYLRIGLSPTLMNQ 84
+ ++CNL ++PH +FS++ PY LSP L NQ
Sbjct: 184 YISVSCNLAAVPHPTFSRDPVPYF---LSPRLSNQ 215
>sp|P22817|IDE_DROME Insulin-degrading enzyme (Insulysin) (Insulinase) (Insulin
protease)
Length = 990
Score = 30.0 bits (66), Expect = 9.2
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = +2
Query: 29 GNGFYDVYEGLNENEREEIDSLVSEIIQFLDMAATLEKTNEELRGDC-KL----FLYELK 193
G GF+D+ L + E +D +V + Q+L+M E + + +C KL F ++ K
Sbjct: 342 GFGFFDIVVDLTQEGLEHVDDIVKIVFQYLEMLRK-EGPKKWIFDECVKLNEMRFRFKEK 400
Query: 194 RTKIQLVXXXXXAEVLKNKLKLSKIRE--LALMQSNRMLPDIVKTYAD 331
LV + +K+ + E +A SN PD++K D
Sbjct: 401 EESENLVTHAV------SSMKIFPLEEVLIAPYLSNEWSPDLIKGLLD 442
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,279,449
Number of Sequences: 369166
Number of extensions: 1795704
Number of successful extensions: 4894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)