Planaria EST Database


DrC_02255

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02255
         (435 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D0K2|SCOT_MOUSE  Succinyl-CoA:3-ketoacid-coenzyme A tra...   118   5e-27
sp|Q29551|SCOT_PIG  Succinyl-CoA:3-ketoacid-coenzyme A trans...   116   2e-26
sp|P55809|SCOT_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tra...   116   2e-26
sp|Q9BYC2|SCOT2_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tr...   115   5e-26
sp|Q09450|SCOT_CAEEL  Probable succinyl-CoA:3-ketoacid-coenz...    96   4e-20
sp|O34263|SCOB_XANCP  Succinyl-CoA:3-ketoacid-coenzyme A tra...    84   2e-16
sp|P63651|SCOB_MYCBO  Probable succinyl-CoA:3-ketoacid-coenz...    82   5e-16
sp|P76459|ATOA_ECOLI  Acetate CoA-transferase beta subunit (...    75   5e-14
sp|P44874|ATOA_HAEIN  Acetate CoA-transferase beta subunit (...    75   6e-14
sp|Q9ZLE4|SCOB_HELPJ  Succinyl-CoA:3-ketoacid-coenzyme A tra...    75   8e-14
>sp|Q9D0K2|SCOT_MOUSE Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  118 bits (296), Expect = 5e-27
 Identities = 58/116 (50%), Positives = 82/116 (70%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+KGMGGAMDLVSS+KTKV+V  EH A   + KI+ +C+LPLTG +CVN+IITEK   
Sbjct: 417 GKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
                       GVF+V++++GL L E+ EG+ + +I ++TGC+F ++  + PMQQ
Sbjct: 474 ------------GVFDVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQ 517
>sp|Q29551|SCOT_PIG Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  116 bits (290), Expect = 2e-26
 Identities = 58/116 (50%), Positives = 80/116 (68%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GK++KGMGGAMDLVSS KTKV+V  EH A   + KI+ +C+LPLTG +CVN+IITEK   
Sbjct: 417 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
                        VF+V+R+ GL L E+ EG+ + +I ++TGC+F ++ K+ PMQQ
Sbjct: 474 ------------AVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQ 517
>sp|P55809|SCOT_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  116 bits (290), Expect = 2e-26
 Identities = 57/116 (49%), Positives = 80/116 (68%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+KGMGGAMDLVSS KTKV+V  EH A   + KI+ +C+LPLTG +CVN+IITEK   
Sbjct: 417 GKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
                        VF+V+++ GL L E+ EG+ + ++ ++TGC+F ++ K+ PMQQ
Sbjct: 474 ------------AVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQ 517
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 2, mitochondrial
           precursor (Testis-specific succinyl CoA:3-oxoacid
           CoA-transferase) (SCOT-t)
          Length = 517

 Score =  115 bits (287), Expect = 5e-26
 Identities = 55/116 (47%), Positives = 78/116 (67%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GK +KGMGGAMDLVSS KT+V+V  +HC  D +PKI+ +C++PLTG RCV++IITEK   
Sbjct: 414 GKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEK--- 470

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
                        VF+V+R+  L L E+ EG+ + +I ++TGC F ++  + PMQQ
Sbjct: 471 ------------AVFDVHRKKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQ 514
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,
           mitochondrial precursor (3-oxoacid CoA-transferase)
          Length = 521

 Score = 95.5 bits (236), Expect = 4e-20
 Identities = 46/116 (39%), Positives = 73/116 (62%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GK++KGMGGAMDLVS+   +VIV+ EH + +G PKI+  C LPLTG   +++IIT+    
Sbjct: 415 GKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCELPLTGKGVISRIITDM--- 471

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
                        VF+V+ ++GL L EV + + + +I + T C+F++++ + PM Q
Sbjct: 472 ------------AVFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMGQ 515
>sp|O34263|SCOB_XANCP Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 213

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 48/105 (45%), Positives = 65/105 (61%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+KGMGGAMDLV+  K +V+V+ EH A DG+ KI+ +C LPLTG   V++IIT+    
Sbjct: 120 GKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITDL--- 175

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEF 316
                        VF+V  + GLVL E AEG+ ++E+   TG  F
Sbjct: 176 ------------AVFDVT-DGGLVLVEAAEGVGLEELRAKTGVAF 207
>sp|P63651|SCOB_MYCBO Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
 sp|P63650|SCOB_MYCTU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 218

 Score = 82.0 bits (201), Expect = 5e-16
 Identities = 48/109 (44%), Positives = 63/109 (57%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+KGMGGAMDLV   + KVIV+ EH A DGSPKI+  C+LPLTG  CV++I+TE    
Sbjct: 123 GKMVKGMGGAMDLVHGAR-KVIVMMEHTAKDGSPKILERCTLPLTGVGCVDRIVTEL--- 178

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLAD 328
                        V +V  + GL L + A G+ + E++  T     L D
Sbjct: 179 ------------AVIDVCAD-GLHLVQTAPGVSVDEVVAKTQPPLVLRD 214
>sp|P76459|ATOA_ECOLI Acetate CoA-transferase beta subunit (Acetyl-CoA:acetoacetate CoA
           transferase beta subunit)
          Length = 216

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 41/108 (37%), Positives = 60/108 (55%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+ GMGGAMDLV+ ++ KVI+  EHCA DGS KI+  C++PLT    V+ ++TE    
Sbjct: 116 GKMVPGMGGAMDLVTGSR-KVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTELAVF 174

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLA 325
           R                  +  + LTE+A+G D+  +   T   F++A
Sbjct: 175 RFI----------------DGKMWLTEIADGCDLATVRAKTEARFEVA 206
>sp|P44874|ATOA_HAEIN Acetate CoA-transferase beta subunit (Acetyl-CoA:acetoacetate CoA
           transferase beta subunit)
          Length = 223

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 46/115 (40%), Positives = 67/115 (58%)
 Frame = +2

Query: 2   GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
           GKM+ GMGGAMDLV+  K KVI+  EHCA  GS KI+ +C+LPLT ++ V  ++TE +++
Sbjct: 118 GKMVPGMGGAMDLVTGAK-KVIIGMEHCAKSGSSKILKKCTLPLTASKKVAMVVTE-LAV 175

Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQ 346
            +++               E  LVL E A  +D++ I   T  +F +AD    MQ
Sbjct: 176 FNFI---------------EGRLVLKEHAPHVDLETIKAKTEADFIVADDFKEMQ 215
>sp|Q9ZLE4|SCOB_HELPJ Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 207

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 45/106 (42%), Positives = 61/106 (57%)
 Frame = +2

Query: 5   KMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSLR 184
           K+IKGMGGAMDLV   K KVIVI EHC   G  K+  ECSLPLTG   V+++IT+     
Sbjct: 117 KLIKGMGGAMDLVHGAK-KVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDL---- 171

Query: 185 SYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKL 322
                       VFE +  + + L E+ EG+ + ++ E T  EF++
Sbjct: 172 -----------AVFEFS-NNAMELVELQEGVSLDQVKEKTEAEFEV 205
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,638,599
Number of Sequences: 369166
Number of extensions: 752238
Number of successful extensions: 2259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)