Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_G09
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0K2|SCOT_MOUSE Succinyl-CoA:3-ketoacid-coenzyme A tra... 118 5e-27
sp|Q29551|SCOT_PIG Succinyl-CoA:3-ketoacid-coenzyme A trans... 116 2e-26
sp|P55809|SCOT_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A tra... 116 2e-26
sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A tr... 115 5e-26
sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenz... 96 4e-20
sp|O34263|SCOB_XANCP Succinyl-CoA:3-ketoacid-coenzyme A tra... 84 2e-16
sp|P63651|SCOB_MYCBO Probable succinyl-CoA:3-ketoacid-coenz... 82 5e-16
sp|P76459|ATOA_ECOLI Acetate CoA-transferase beta subunit (... 75 5e-14
sp|P44874|ATOA_HAEIN Acetate CoA-transferase beta subunit (... 75 6e-14
sp|Q9ZLE4|SCOB_HELPJ Succinyl-CoA:3-ketoacid-coenzyme A tra... 75 8e-14
>sp|Q9D0K2|SCOT_MOUSE Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
precursor (Somatic-type succinyl CoA:3-oxoacid
CoA-transferase) (Scot-S)
Length = 520
Score = 118 bits (296), Expect = 5e-27
Identities = 58/116 (50%), Positives = 82/116 (70%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+KGMGGAMDLVSS+KTKV+V EH A + KI+ +C+LPLTG +CVN+IITEK
Sbjct: 417 GKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
GVF+V++++GL L E+ EG+ + +I ++TGC+F ++ + PMQQ
Sbjct: 474 ------------GVFDVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQ 517
>sp|Q29551|SCOT_PIG Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
precursor (Somatic-type succinyl CoA:3-oxoacid
CoA-transferase) (Scot-S)
Length = 520
Score = 116 bits (290), Expect = 2e-26
Identities = 58/116 (50%), Positives = 80/116 (68%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GK++KGMGGAMDLVSS KTKV+V EH A + KI+ +C+LPLTG +CVN+IITEK
Sbjct: 417 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
VF+V+R+ GL L E+ EG+ + +I ++TGC+F ++ K+ PMQQ
Sbjct: 474 ------------AVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQ 517
>sp|P55809|SCOT_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
precursor (Somatic-type succinyl CoA:3-oxoacid
CoA-transferase) (Scot-S)
Length = 520
Score = 116 bits (290), Expect = 2e-26
Identities = 57/116 (49%), Positives = 80/116 (68%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+KGMGGAMDLVSS KTKV+V EH A + KI+ +C+LPLTG +CVN+IITEK
Sbjct: 417 GKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEK--- 473
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
VF+V+++ GL L E+ EG+ + ++ ++TGC+F ++ K+ PMQQ
Sbjct: 474 ------------AVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQ 517
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 2, mitochondrial
precursor (Testis-specific succinyl CoA:3-oxoacid
CoA-transferase) (SCOT-t)
Length = 517
Score = 115 bits (287), Expect = 5e-26
Identities = 55/116 (47%), Positives = 78/116 (67%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GK +KGMGGAMDLVSS KT+V+V +HC D +PKI+ +C++PLTG RCV++IITEK
Sbjct: 414 GKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEK--- 470
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
VF+V+R+ L L E+ EG+ + +I ++TGC F ++ + PMQQ
Sbjct: 471 ------------AVFDVHRKKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQ 514
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,
mitochondrial precursor (3-oxoacid CoA-transferase)
Length = 521
Score = 95.5 bits (236), Expect = 4e-20
Identities = 46/116 (39%), Positives = 73/116 (62%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GK++KGMGGAMDLVS+ +VIV+ EH + +G PKI+ C LPLTG +++IIT+
Sbjct: 415 GKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCELPLTGKGVISRIITDM--- 471
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQQ 349
VF+V+ ++GL L EV + + + +I + T C+F++++ + PM Q
Sbjct: 472 ------------AVFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMGQ 515
>sp|O34263|SCOB_XANCP Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
CoA:3-oxoacid CoA-transferase) (OXCT B)
Length = 213
Score = 83.6 bits (205), Expect = 2e-16
Identities = 48/105 (45%), Positives = 65/105 (61%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+KGMGGAMDLV+ K +V+V+ EH A DG+ KI+ +C LPLTG V++IIT+
Sbjct: 120 GKMVKGMGGAMDLVAGVK-RVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITDL--- 175
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEF 316
VF+V + GLVL E AEG+ ++E+ TG F
Sbjct: 176 ------------AVFDVT-DGGLVLVEAAEGVGLEELRAKTGVAF 207
>sp|P63651|SCOB_MYCBO Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
(Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
sp|P63650|SCOB_MYCTU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
(Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
Length = 218
Score = 82.0 bits (201), Expect = 5e-16
Identities = 48/109 (44%), Positives = 63/109 (57%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+KGMGGAMDLV + KVIV+ EH A DGSPKI+ C+LPLTG CV++I+TE
Sbjct: 123 GKMVKGMGGAMDLVHGAR-KVIVMMEHTAKDGSPKILERCTLPLTGVGCVDRIVTEL--- 178
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLAD 328
V +V + GL L + A G+ + E++ T L D
Sbjct: 179 ------------AVIDVCAD-GLHLVQTAPGVSVDEVVAKTQPPLVLRD 214
>sp|P76459|ATOA_ECOLI Acetate CoA-transferase beta subunit (Acetyl-CoA:acetoacetate CoA
transferase beta subunit)
Length = 216
Score = 75.5 bits (184), Expect = 5e-14
Identities = 41/108 (37%), Positives = 60/108 (55%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+ GMGGAMDLV+ ++ KVI+ EHCA DGS KI+ C++PLT V+ ++TE
Sbjct: 116 GKMVPGMGGAMDLVTGSR-KVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTELAVF 174
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLA 325
R + + LTE+A+G D+ + T F++A
Sbjct: 175 RFI----------------DGKMWLTEIADGCDLATVRAKTEARFEVA 206
>sp|P44874|ATOA_HAEIN Acetate CoA-transferase beta subunit (Acetyl-CoA:acetoacetate CoA
transferase beta subunit)
Length = 223
Score = 75.1 bits (183), Expect = 6e-14
Identities = 46/115 (40%), Positives = 67/115 (58%)
Frame = +2
Query: 2 GKMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSL 181
GKM+ GMGGAMDLV+ K KVI+ EHCA GS KI+ +C+LPLT ++ V ++TE +++
Sbjct: 118 GKMVPGMGGAMDLVTGAK-KVIIGMEHCAKSGSSKILKKCTLPLTASKKVAMVVTE-LAV 175
Query: 182 RSYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKLADKISPMQ 346
+++ E LVL E A +D++ I T +F +AD MQ
Sbjct: 176 FNFI---------------EGRLVLKEHAPHVDLETIKAKTEADFIVADDFKEMQ 215
>sp|Q9ZLE4|SCOB_HELPJ Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
CoA:3-oxoacid CoA-transferase) (OXCT B)
Length = 207
Score = 74.7 bits (182), Expect = 8e-14
Identities = 45/106 (42%), Positives = 61/106 (57%)
Frame = +2
Query: 5 KMIKGMGGAMDLVSSNKTKVIVITEHCASDGSPKIVNECSLPLTGARCVNKIITEKVSLR 184
K+IKGMGGAMDLV K KVIVI EHC G K+ ECSLPLTG V+++IT+
Sbjct: 117 KLIKGMGGAMDLVHGAK-KVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDL---- 171
Query: 185 SYLK**LISF*GVFEVNRESGLVLTEVAEGIDIQEIIETTGCEFKL 322
VFE + + + L E+ EG+ + ++ E T EF++
Sbjct: 172 -----------AVFEFS-NNAMELVELQEGVSLDQVKEKTEAEFEV 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,638,599
Number of Sequences: 369166
Number of extensions: 752238
Number of successful extensions: 2259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)