Planaria EST Database


DrC_02253

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02253
         (579 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q75WE7|LHR2A_RAT  Loss of heterozygosity 11 chromosomal r...    45   1e-04
sp|Q99KC8|LHR2A_MOUSE  Loss of heterozygosity 11 chromosomal...    42   0.001
sp|O00534|LHR2A_HUMAN  Loss of heterozygosity 11 chromosomal...    42   0.001
sp|Q9NSV4|DIAP3_HUMAN  Diaphanous protein homolog 3 (Diaphan...    30   4.3  
sp|P53174|PRM8_YEAST  Pheromone-regulated membrane protein 8...    29   7.4  
sp|O58530|RGYR_PYRHO  Reverse gyrase [Includes: Helicase ; T...    29   7.4  
sp|P47906|RMAR_WILMR  Mitochondrial ribosomal protein VAR1         29   7.4  
sp|P53112|PEX14_YEAST  Peroxisomal membrane protein PEX14 (P...    29   9.6  
sp|O51750|MVIN_BORBU  Virulence factor mviN homolog                29   9.6  
>sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region 2 gene A protein
           homolog (Mast cell surface antigen 1) (Masa-1)
          Length = 822

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 232 DVIIFLIDQQNINGSWNYCEKILTKINIDAADFQNKKPKGITD-EIWITVLIYQYLVTKE 408
           +V++ LI  QN NGSW   E +   +     D +   P    D   W T+L   +L    
Sbjct: 689 NVVLQLIFLQNANGSWKLDENLTKILGTTLEDTKAANPSQHGDPSAWATILAVLWLHANG 748

Query: 409 QSREKEWRLVAKKAKQWIEDN 471
           Q  + EW L+ +KA  W+ D+
Sbjct: 749 QDLKCEWELLERKAVAWLHDH 769
>sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal region 2 gene A protein
           homolog
          Length = 793

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 232 DVIIFLIDQQNINGSWNYCEKILTKINIDAADFQNKKPKGITD-EIWITVLIYQYLVTKE 408
           + ++ LI  Q  NGSW   E +   +   + D +   P    D   W TVL   +L    
Sbjct: 686 NAVVQLISLQKANGSWELDEDLTKILGTKSKDIKAANPAKHEDPSAWSTVLAVVWLHANG 745

Query: 409 QSREKEWRLVAKKAKQWIEDN 471
              + EW L+ +KA  W+ D+
Sbjct: 746 TDLKCEWELLERKAVAWLHDH 766
>sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal region 2 gene A protein
           (Breast cancer suppressor candidate 1) (BCSC-1)
          Length = 786

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 238 IIFLIDQQNINGSWNYCEKILTKINIDAADFQNKKPKGITDEI-WITVLIYQYLVTKEQS 414
           ++ LI  QN NGSW+  E +   + +   +    +P  + D   W T+L   +L +  + 
Sbjct: 681 LVQLIYHQNANGSWDLNEDLAKILGMSLEEIMAAQPAELVDSSGWATILAVIWLHSNGKD 740

Query: 415 REKEWRLVAKKAKQWI 462
            + EW L+ +KA  W+
Sbjct: 741 LKCEWELLERKAVAWM 756
>sp|Q9NSV4|DIAP3_HUMAN Diaphanous protein homolog 3 (Diaphanous-related formin-3) (DRF3)
          Length = 1110

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 163 PKILKRSELCEEMKESKSVTKSIDVIIFLIDQQN 264
           P I+  S  CEE+K+SKS +K +++++ + +  N
Sbjct: 818 PDIMAVSTACEEIKKSKSFSKLLELVLLMGNYMN 851
>sp|P53174|PRM8_YEAST Pheromone-regulated membrane protein 8 (DUP240 protein PRM8) (DUP1
           protein)
          Length = 237

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 352 ITDEIWITVLIYQYLVTKEQSREKEWRLVAKKAKQWIEDN 471
           I+DE +   L+ + +  K   + KEWR +  K  Q++ DN
Sbjct: 101 ISDEDFKCKLLMEIITRKPTVKGKEWRTITYKMNQYLFDN 140
>sp|O58530|RGYR_PYRHO Reverse gyrase [Includes: Helicase ; Topoisomerase ] [Contains: Pho
            r-Gyr intein]
          Length = 1624

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
 Frame = +1

Query: 163  PKILKRSEL-CEEMKESKSVTKSIDV---IIFLIDQQNINGSWNYCEKILTKINIDAADF 330
            PK+ K   L  +E+K+ ++   S+     +I L+ ++ I     Y + + T +       
Sbjct: 1499 PKLEKGQRLRVKEVKQWRAPKVSLYTQGDVIALMKERGIGRPSTYAKIVQTLLQRGYVIE 1558

Query: 331  QNKKPKGITDEIWITVLIYQYLVTKEQS--REKEWRLVAKKAKQWIEDNVNYRDVLESIF 504
               K K +  E  I V  YQYL+TK +    E+  R + K      E   +Y+DVL  ++
Sbjct: 1559 TKGKKKLVPTEKGIKV--YQYLITKYKDLVSEERTRQLEKIMDMVEEAKADYQDVLNELY 1616

Query: 505  D 507
            +
Sbjct: 1617 E 1617
>sp|P47906|RMAR_WILMR Mitochondrial ribosomal protein VAR1
          Length = 380

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +2

Query: 254 INKISMDLGIIVKRFLQKLISMLLIFKTKNRRE*----QMKYGLLF*FINILLPKNKAER 421
           INKI+ +L  +V ++L   I + ++FK KN ++      +K  LLF  ++     NK  R
Sbjct: 269 INKITNEL--LVNKYL---IGLSMLFKGKNIKKAGVSRSIKEKLLFGSLS-----NKLYR 318

Query: 422 KNGDLLQKKRNNGSKIMLIIEMFWNR 499
           KN  LL  K NN +   L  ++  N+
Sbjct: 319 KNSGLLVYKNNNNTTKYLNFDININK 344
>sp|P53112|PEX14_YEAST Peroxisomal membrane protein PEX14 (Peroxin-14)
          Length = 341

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
 Frame = +1

Query: 253 DQQNINGSWNYCEKILTKINIDAADFQNKKPKGITDEIWITVLIYQYLVTKEQSREK--- 423
           D++ I+  ++  + +L  I  + A+F+ K+ + + +       + Q LV   +SREK   
Sbjct: 134 DKKEIDDQFSKIDTVLNAIEAEQAEFRKKESETLKELSDTIAELKQALVQTTRSREKIED 193

Query: 424 EWRLVAKKA---KQWIEDNVNYRDVLESIFDISMEL 522
           E+R+V  +    +  I+  V+  D ++ + +I  E+
Sbjct: 194 EFRIVKLEVVNMQNTIDKFVSDNDGMQELNNIQKEM 229
>sp|O51750|MVIN_BORBU Virulence factor mviN homolog
          Length = 512

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
 Frame = -1

Query: 480 IINIIFDPLFRFFCN--------KSPFFLSALF--------------FGNKILINQNSNP 367
           ++ ++F  +F FF          K+PF+LS LF              +G   L    S  
Sbjct: 359 LLGLLFYSMFGFFQKYYFSIRDAKTPFYLSVLFSILDIAISVFGINYYGLNALALAQSIS 418

Query: 366 YFICYSLRFFVLKISSIDINFCKNLFTIIPRSIDI 262
           + IC  + +F++    + I+  + LF ++   I +
Sbjct: 419 FMICVIVFYFIILKRGVKIDLIEILFVLLKSIITL 453
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,446,270
Number of Sequences: 369166
Number of extensions: 1151776
Number of successful extensions: 3544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3515
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)