Planaria EST Database


DrC_02242

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02242
         (951 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99807|COQ7_HUMAN  Ubiquinone biosynthesis protein COQ7 h...   234   3e-61
sp|P97478|COQ7_MOUSE  Ubiquinone biosynthesis protein COQ7 h...   234   3e-61
sp|Q63619|COQ7_RAT  Ubiquinone biosynthesis protein COQ7 hom...   230   4e-60
sp|P48376|COQ7_CAEEL  Ubiquinone biosynthesis protein COQ7 h...   196   1e-49
sp|P13079|CARB_STRTH  rRNA methyltransferase (Carbomycin-res...    32   3.4  
sp|Q72R59|FLAB_LEPIC  Flagellar filament 35 kDa core protein...    30   7.7  
sp|O51941|FLAB_LEPIN  Flagellar filament 35 kDa core protein...    30   7.7  
>sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
           biosynthesis protein 7 homolog) (Timing protein clk-1
           homolog)
          Length = 217

 Score =  234 bits (597), Expect = 3e-61
 Identities = 115/188 (61%), Positives = 144/188 (76%), Gaps = 2/188 (1%)
 Frame = -1

Query: 558 RIGTRQMASRMSLK--TRALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLE 385
           R   R  +S M+L   +RA +D+I RV+HAGE+GANRIY GQ+A+L  T   P+I+ M +
Sbjct: 29  RTSVRFRSSGMTLDNISRAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWD 88

Query: 384 QEKVHLAKFEELIPKYKTRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKH 205
           QEK HL KF EL+  ++ RPT+LMP WN+ GF LGAGTALLGKE AMACTVAVE  I  H
Sbjct: 89  QEKDHLKKFNELMVMFRVRPTVLMPLWNVLGFALGAGTALLGKEGAMACTVAVEESIAHH 148

Query: 204 YNDQIRDLLEDDPNGHKELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCR 25
           YN+QIR L+E+DP  ++ELL++IKKFRDEELEHHD GL+H+AE AP Y +L S I+ GCR
Sbjct: 149 YNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDHDAELAPAYAVLKSIIQAGCR 208

Query: 24  AAIFLSER 1
            AI+LSER
Sbjct: 209 VAIYLSER 216
>sp|P97478|COQ7_MOUSE Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
           biosynthesis protein 7 homolog) (Timing protein clk-1
           homolog)
          Length = 217

 Score =  234 bits (596), Expect = 3e-61
 Identities = 112/171 (65%), Positives = 137/171 (80%)
 Frame = -1

Query: 513 RALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKVHLAKFEELIPKYK 334
           RA +D+I RV+HAGE+GANRIY GQ+A+L  T   P+I+ M +QEK HL KF EL+  ++
Sbjct: 46  RAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWDQEKNHLKKFNELMIAFR 105

Query: 333 TRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDPNGHK 154
            RPT+LMP WN+AGF LGAGTALLGKE AMACTVAVE  I  HYN+QIR L+E+DP  ++
Sbjct: 106 VRPTVLMPLWNVAGFALGAGTALLGKEGAMACTVAVEESIANHYNNQIRMLMEEDPEKYE 165

Query: 153 ELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIFLSER 1
           ELL+VIK+FRDEELEHHDTGL+H+AE AP Y LL   I+ GC AAI+LSER
Sbjct: 166 ELLQVIKQFRDEELEHHDTGLDHDAELAPAYALLKRIIQAGCSAAIYLSER 216
>sp|Q63619|COQ7_RAT Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
           biosynthesis protein 7 homolog) (Timing protein clk-1
           homolog)
          Length = 179

 Score =  230 bits (587), Expect = 4e-60
 Identities = 111/171 (64%), Positives = 135/171 (78%)
 Frame = -1

Query: 513 RALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKVHLAKFEELIPKYK 334
           RA +D+I RV+HAGE+GANRIY GQ+A+L  T   P+I+ M +QEK HL KF EL+  ++
Sbjct: 8   RAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWDQEKNHLKKFNELMVAFR 67

Query: 333 TRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDPNGHK 154
            RPT+LMP WN+AGF LGAGTALLGKE  MACTVAVE  I  HYN+QIR L+E+D   ++
Sbjct: 68  VRPTVLMPLWNVAGFALGAGTALLGKEGGMACTVAVEESIAHHYNNQIRMLMEEDAEKYE 127

Query: 153 ELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIFLSER 1
           ELL+VIK+FRDEELEHHDTGLEH+AE AP Y LL   I+ GC AAI+LSER
Sbjct: 128 ELLQVIKQFRDEELEHHDTGLEHDAELAPAYTLLKRLIQAGCSAAIYLSER 178
>sp|P48376|COQ7_CAEEL Ubiquinone biosynthesis protein COQ7 homolog (Clock abnormal
           protein 1) (Protein clk-1)
          Length = 187

 Score =  196 bits (497), Expect = 1e-49
 Identities = 94/184 (51%), Positives = 130/184 (70%)
 Frame = -1

Query: 552 GTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKV 373
           G    ASR     +ALI+KI RV+HAGE GA+RIY GQLA+L+G+    +I+ M ++EK 
Sbjct: 8   GAHTAASR-----QALIEKIIRVDHAGELGADRIYAGQLAVLQGSSVGSVIKKMWDEEKE 62

Query: 372 HLAKFEELIPKYKTRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQ 193
           HL   E L  K+    T+  P +++A + LG G+ALLGKE AMACT+AVE +IG+HYNDQ
Sbjct: 63  HLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLGKEGAMACTIAVEELIGQHYNDQ 122

Query: 192 IRDLLEDDPNGHKELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIF 13
           +++LL DDP  HKELL+++ + RDEEL HHDTG+EH+  +AP Y  L   I+ GC+ AI 
Sbjct: 123 LKELLADDPETHKELLKILTRLRDEELHHHDTGVEHDGMKAPAYSALKWIIQTGCKGAIA 182

Query: 12  LSER 1
           ++E+
Sbjct: 183 IAEK 186
>sp|P13079|CARB_STRTH rRNA methyltransferase (Carbomycin-resistance protein)
          Length = 299

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 285 LGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDP 166
           +GAG   + +E A  C   V   I +H+ D++R+   +DP
Sbjct: 81  VGAGNGAITRELARLCRRVVAYEIDRHFADRLREATAEDP 120
>sp|Q72R59|FLAB_LEPIC Flagellar filament 35 kDa core protein (Flagellin class B)
          Length = 283

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -1

Query: 585 QVVQIKASCRIGTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLA 433
           +V+ I+ S  I + +    + ++  AL+D++ R+    EF   +++EGQ A
Sbjct: 91  RVLAIQTSNGIYSNEDRQLVQVEVSALVDEVDRIASQAEFNKFKLFEGQFA 141
>sp|O51941|FLAB_LEPIN Flagellar filament 35 kDa core protein (Flagellin class B) (35 kDa
           antigen)
          Length = 283

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -1

Query: 585 QVVQIKASCRIGTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLA 433
           +V+ I+ S  I + +    + ++  AL+D++ R+    EF   +++EGQ A
Sbjct: 91  RVLAIQTSNGIYSNEDRQLVQVEVSALVDEVDRIASQAEFNKFKLFEGQFA 141
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,193,997
Number of Sequences: 369166
Number of extensions: 1844278
Number of successful extensions: 5582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5578
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)