Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B18
(951 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 h... 234 3e-61
sp|P97478|COQ7_MOUSE Ubiquinone biosynthesis protein COQ7 h... 234 3e-61
sp|Q63619|COQ7_RAT Ubiquinone biosynthesis protein COQ7 hom... 230 4e-60
sp|P48376|COQ7_CAEEL Ubiquinone biosynthesis protein COQ7 h... 196 1e-49
sp|P13079|CARB_STRTH rRNA methyltransferase (Carbomycin-res... 32 3.4
sp|Q72R59|FLAB_LEPIC Flagellar filament 35 kDa core protein... 30 7.7
sp|O51941|FLAB_LEPIN Flagellar filament 35 kDa core protein... 30 7.7
>sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
biosynthesis protein 7 homolog) (Timing protein clk-1
homolog)
Length = 217
Score = 234 bits (597), Expect = 3e-61
Identities = 115/188 (61%), Positives = 144/188 (76%), Gaps = 2/188 (1%)
Frame = -1
Query: 558 RIGTRQMASRMSLK--TRALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLE 385
R R +S M+L +RA +D+I RV+HAGE+GANRIY GQ+A+L T P+I+ M +
Sbjct: 29 RTSVRFRSSGMTLDNISRAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWD 88
Query: 384 QEKVHLAKFEELIPKYKTRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKH 205
QEK HL KF EL+ ++ RPT+LMP WN+ GF LGAGTALLGKE AMACTVAVE I H
Sbjct: 89 QEKDHLKKFNELMVMFRVRPTVLMPLWNVLGFALGAGTALLGKEGAMACTVAVEESIAHH 148
Query: 204 YNDQIRDLLEDDPNGHKELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCR 25
YN+QIR L+E+DP ++ELL++IKKFRDEELEHHD GL+H+AE AP Y +L S I+ GCR
Sbjct: 149 YNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDHDAELAPAYAVLKSIIQAGCR 208
Query: 24 AAIFLSER 1
AI+LSER
Sbjct: 209 VAIYLSER 216
>sp|P97478|COQ7_MOUSE Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
biosynthesis protein 7 homolog) (Timing protein clk-1
homolog)
Length = 217
Score = 234 bits (596), Expect = 3e-61
Identities = 112/171 (65%), Positives = 137/171 (80%)
Frame = -1
Query: 513 RALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKVHLAKFEELIPKYK 334
RA +D+I RV+HAGE+GANRIY GQ+A+L T P+I+ M +QEK HL KF EL+ ++
Sbjct: 46 RAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWDQEKNHLKKFNELMIAFR 105
Query: 333 TRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDPNGHK 154
RPT+LMP WN+AGF LGAGTALLGKE AMACTVAVE I HYN+QIR L+E+DP ++
Sbjct: 106 VRPTVLMPLWNVAGFALGAGTALLGKEGAMACTVAVEESIANHYNNQIRMLMEEDPEKYE 165
Query: 153 ELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIFLSER 1
ELL+VIK+FRDEELEHHDTGL+H+AE AP Y LL I+ GC AAI+LSER
Sbjct: 166 ELLQVIKQFRDEELEHHDTGLDHDAELAPAYALLKRIIQAGCSAAIYLSER 216
>sp|Q63619|COQ7_RAT Ubiquinone biosynthesis protein COQ7 homolog (Coenzyme Q
biosynthesis protein 7 homolog) (Timing protein clk-1
homolog)
Length = 179
Score = 230 bits (587), Expect = 4e-60
Identities = 111/171 (64%), Positives = 135/171 (78%)
Frame = -1
Query: 513 RALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKVHLAKFEELIPKYK 334
RA +D+I RV+HAGE+GANRIY GQ+A+L T P+I+ M +QEK HL KF EL+ ++
Sbjct: 8 RAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWDQEKNHLKKFNELMVAFR 67
Query: 333 TRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDPNGHK 154
RPT+LMP WN+AGF LGAGTALLGKE MACTVAVE I HYN+QIR L+E+D ++
Sbjct: 68 VRPTVLMPLWNVAGFALGAGTALLGKEGGMACTVAVEESIAHHYNNQIRMLMEEDAEKYE 127
Query: 153 ELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIFLSER 1
ELL+VIK+FRDEELEHHDTGLEH+AE AP Y LL I+ GC AAI+LSER
Sbjct: 128 ELLQVIKQFRDEELEHHDTGLEHDAELAPAYTLLKRLIQAGCSAAIYLSER 178
>sp|P48376|COQ7_CAEEL Ubiquinone biosynthesis protein COQ7 homolog (Clock abnormal
protein 1) (Protein clk-1)
Length = 187
Score = 196 bits (497), Expect = 1e-49
Identities = 94/184 (51%), Positives = 130/184 (70%)
Frame = -1
Query: 552 GTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLAILKGTDSEPIIRHMLEQEKV 373
G ASR +ALI+KI RV+HAGE GA+RIY GQLA+L+G+ +I+ M ++EK
Sbjct: 8 GAHTAASR-----QALIEKIIRVDHAGELGADRIYAGQLAVLQGSSVGSVIKKMWDEEKE 62
Query: 372 HLAKFEELIPKYKTRPTILMPFWNIAGFCLGAGTALLGKEAAMACTVAVESVIGKHYNDQ 193
HL E L K+ T+ P +++A + LG G+ALLGKE AMACT+AVE +IG+HYNDQ
Sbjct: 63 HLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLGKEGAMACTIAVEELIGQHYNDQ 122
Query: 192 IRDLLEDDPNGHKELLEVIKKFRDEELEHHDTGLEHNAEQAPFYQLLSSTIKFGCRAAIF 13
+++LL DDP HKELL+++ + RDEEL HHDTG+EH+ +AP Y L I+ GC+ AI
Sbjct: 123 LKELLADDPETHKELLKILTRLRDEELHHHDTGVEHDGMKAPAYSALKWIIQTGCKGAIA 182
Query: 12 LSER 1
++E+
Sbjct: 183 IAEK 186
>sp|P13079|CARB_STRTH rRNA methyltransferase (Carbomycin-resistance protein)
Length = 299
Score = 31.6 bits (70), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 285 LGAGTALLGKEAAMACTVAVESVIGKHYNDQIRDLLEDDP 166
+GAG + +E A C V I +H+ D++R+ +DP
Sbjct: 81 VGAGNGAITRELARLCRRVVAYEIDRHFADRLREATAEDP 120
>sp|Q72R59|FLAB_LEPIC Flagellar filament 35 kDa core protein (Flagellin class B)
Length = 283
Score = 30.4 bits (67), Expect = 7.7
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -1
Query: 585 QVVQIKASCRIGTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLA 433
+V+ I+ S I + + + ++ AL+D++ R+ EF +++EGQ A
Sbjct: 91 RVLAIQTSNGIYSNEDRQLVQVEVSALVDEVDRIASQAEFNKFKLFEGQFA 141
>sp|O51941|FLAB_LEPIN Flagellar filament 35 kDa core protein (Flagellin class B) (35 kDa
antigen)
Length = 283
Score = 30.4 bits (67), Expect = 7.7
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -1
Query: 585 QVVQIKASCRIGTRQMASRMSLKTRALIDKITRVNHAGEFGANRIYEGQLA 433
+V+ I+ S I + + + ++ AL+D++ R+ EF +++EGQ A
Sbjct: 91 RVLAIQTSNGIYSNEDRQLVQVEVSALVDEVDRIASQAEFNKFKLFEGQFA 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,193,997
Number of Sequences: 369166
Number of extensions: 1844278
Number of successful extensions: 5582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5578
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)