Planaria EST Database


DrC_02239

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02239
         (206 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30153|2AAA_HUMAN  Serine/threonine protein phosphatase 2...    86   2e-17
sp|P54612|2AAA_PIG  Serine/threonine protein phosphatase 2A,...    86   3e-17
sp|P54613|2AAB_PIG  Serine/threonine protein phosphatase 2A,...    82   3e-16
sp|P30154|2AAB_HUMAN  Serine/threonine protein phosphatase 2...    77   9e-15
sp|Q09543|2AAA_CAEEL  Probable protein phosphatase PP2A regu...    65   5e-11
sp|P36179|2AAA_DROME  Protein phosphatase PP2A, 65 kDa regul...    63   2e-10
sp|P36875|2AAA_PEA  Protein phosphatase PP2A regulatory subu...    51   9e-07
sp|Q9UT08|2AAA_SCHPO  Protein phosphatase PP2A regulatory su...    44   9e-05
sp|P31383|2AAA_YEAST  Protein phosphatase PP2A regulatory su...    43   2e-04
sp|Q9JZ36|FTSK1_NEIMB  DNA translocase ftsK 1                      28   6.6  
>sp|P30153|2AAA_HUMAN Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
           A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
           (PP2A, subunit A, R1-alpha isoform) (Medium tumor
           antigen-associated 61 kDa protein)
          Length = 589

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 39/67 (58%), Positives = 53/67 (79%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           K+K+FC  L +D RE+VIM+QI P +K LV +AN  VK+ LAS +MGL+P+LGK N I+H
Sbjct: 305 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 364

Query: 186 LIPIFLA 206
           L+P+FLA
Sbjct: 365 LLPLFLA 371
>sp|P54612|2AAA_PIG Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
           A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
           (PP2A, subunit A, R1-alpha isoform)
 sp|Q76MZ3|2AAA_MOUSE Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
           A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
           (PP2A, subunit A, R1-alpha isoform)
          Length = 589

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 39/67 (58%), Positives = 52/67 (77%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           K+K+FC  L +D RE+VIM QI P +K LV +AN  VK+ LAS +MGL+P+LGK N I+H
Sbjct: 305 KVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 364

Query: 186 LIPIFLA 206
           L+P+FLA
Sbjct: 365 LLPLFLA 371
>sp|P54613|2AAB_PIG Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
           A, beta isoform (PP2A, subunit A, PR65-beta isoform)
           (PP2A, subunit A, R1-beta isoform)
          Length = 602

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           K+K+ C  LP + RE++IMNQI P +K LV + N  VK+ LAS +MGL+ +LGK+N I+H
Sbjct: 318 KVKELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH 377

Query: 186 LIPIFLA 206
           L+P+FLA
Sbjct: 378 LLPLFLA 384
>sp|P30154|2AAB_HUMAN Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
           A, beta isoform (PP2A, subunit A, PR65-beta isoform)
           (PP2A, subunit A, R1-beta isoform)
          Length = 601

 Score = 77.4 bits (189), Expect = 9e-15
 Identities = 35/67 (52%), Positives = 50/67 (74%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           K+K+    LP + RE++IMNQI P +K LV + N  VK+ LAS +MGL+ +LGK+N I+H
Sbjct: 317 KVKELGENLPIEDRETIIMNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH 376

Query: 186 LIPIFLA 206
           L+P+FLA
Sbjct: 377 LLPLFLA 383
>sp|Q09543|2AAA_CAEEL Probable protein phosphatase PP2A regulatory subunit (Protein
           phosphatase PP2A regulatory subunit A)
          Length = 590

 Score = 65.1 bits (157), Expect = 5e-11
 Identities = 27/66 (40%), Positives = 44/66 (66%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           ++++F   LP DKR+++I N +    K LV + N  VK+ LA  +MGLAPL+GK+  +  
Sbjct: 307 RLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGLAPLIGKEQTVSE 366

Query: 186 LIPIFL 203
           L+PI++
Sbjct: 367 LLPIYM 372
>sp|P36179|2AAA_DROME Protein phosphatase PP2A, 65 kDa regulatory subunit (Protein
           phosphatase PP2A regulatory subunit A) (PR65)
          Length = 591

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 43/66 (65%)
 Frame = +3

Query: 6   KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
           K+KDFC  L    +  +I++ I P V+ LV + N  VK+ LAS +MGL+P+LG    ++ 
Sbjct: 307 KVKDFCANLDKVNQVQIILSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGAYQTVEQ 366

Query: 186 LIPIFL 203
           L+P+FL
Sbjct: 367 LLPLFL 372
>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (PR65)
          Length = 395

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 26/68 (38%), Positives = 41/68 (60%)
 Frame = +3

Query: 3   GKMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVID 182
           GK+  F   L  +    + +  I P VK L  +++  V++ LAS +MG+AP+LGK   I+
Sbjct: 109 GKVSKFSRILSPE----LAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIE 164

Query: 183 HLIPIFLA 206
            L+PIFL+
Sbjct: 165 QLLPIFLS 172
>sp|Q9UT08|2AAA_SCHPO Protein phosphatase PP2A regulatory subunit A (PR65) (Protein
           phosphatase 2A 65 kDa regulatory subunit)
          Length = 590

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 21/62 (33%), Positives = 36/62 (58%)
 Frame = +3

Query: 18  FCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLIPI 197
           FC  L  DKR  +++ +I P ++ L+ +    V+  L   +  LAP LGK+   ++L+P+
Sbjct: 311 FCELL--DKR--IVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPM 366

Query: 198 FL 203
           FL
Sbjct: 367 FL 368
>sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory subunit A (PR65)
          Length = 635

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +3

Query: 51  SVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLIPIFL 203
           S+I+N+I PAV+ L  + +  V++ LAS++  +  LL K  VI++ +PI L
Sbjct: 355 SIILNKILPAVQNLSMDESETVRSALASKITNIVLLLNKDQVINNFLPILL 405
>sp|Q9JZ36|FTSK1_NEIMB DNA translocase ftsK 1
          Length = 812

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 30  LPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLI 191
           LP+DKR+ V++++I  +   +  EA  ++   L   + G  P++G    + HL+
Sbjct: 425 LPNDKRQDVMLSEILSS--PVFAEAKSKLTVALGKDIAG-TPVVGDLAKMPHLL 475
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,202,955
Number of Sequences: 369166
Number of extensions: 370810
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)