Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A24
(206 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30153|2AAA_HUMAN Serine/threonine protein phosphatase 2... 86 2e-17
sp|P54612|2AAA_PIG Serine/threonine protein phosphatase 2A,... 86 3e-17
sp|P54613|2AAB_PIG Serine/threonine protein phosphatase 2A,... 82 3e-16
sp|P30154|2AAB_HUMAN Serine/threonine protein phosphatase 2... 77 9e-15
sp|Q09543|2AAA_CAEEL Probable protein phosphatase PP2A regu... 65 5e-11
sp|P36179|2AAA_DROME Protein phosphatase PP2A, 65 kDa regul... 63 2e-10
sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subu... 51 9e-07
sp|Q9UT08|2AAA_SCHPO Protein phosphatase PP2A regulatory su... 44 9e-05
sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory su... 43 2e-04
sp|Q9JZ36|FTSK1_NEIMB DNA translocase ftsK 1 28 6.6
>sp|P30153|2AAA_HUMAN Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
(PP2A, subunit A, R1-alpha isoform) (Medium tumor
antigen-associated 61 kDa protein)
Length = 589
Score = 86.3 bits (212), Expect = 2e-17
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
K+K+FC L +D RE+VIM+QI P +K LV +AN VK+ LAS +MGL+P+LGK N I+H
Sbjct: 305 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 364
Query: 186 LIPIFLA 206
L+P+FLA
Sbjct: 365 LLPLFLA 371
>sp|P54612|2AAA_PIG Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
(PP2A, subunit A, R1-alpha isoform)
sp|Q76MZ3|2AAA_MOUSE Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
A, alpha isoform (PP2A, subunit A, PR65-alpha isoform)
(PP2A, subunit A, R1-alpha isoform)
Length = 589
Score = 85.9 bits (211), Expect = 3e-17
Identities = 39/67 (58%), Positives = 52/67 (77%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
K+K+FC L +D RE+VIM QI P +K LV +AN VK+ LAS +MGL+P+LGK N I+H
Sbjct: 305 KVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 364
Query: 186 LIPIFLA 206
L+P+FLA
Sbjct: 365 LLPLFLA 371
>sp|P54613|2AAB_PIG Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
A, beta isoform (PP2A, subunit A, PR65-beta isoform)
(PP2A, subunit A, R1-beta isoform)
Length = 602
Score = 82.4 bits (202), Expect = 3e-16
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
K+K+ C LP + RE++IMNQI P +K LV + N VK+ LAS +MGL+ +LGK+N I+H
Sbjct: 318 KVKELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH 377
Query: 186 LIPIFLA 206
L+P+FLA
Sbjct: 378 LLPLFLA 384
>sp|P30154|2AAB_HUMAN Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit
A, beta isoform (PP2A, subunit A, PR65-beta isoform)
(PP2A, subunit A, R1-beta isoform)
Length = 601
Score = 77.4 bits (189), Expect = 9e-15
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
K+K+ LP + RE++IMNQI P +K LV + N VK+ LAS +MGL+ +LGK+N I+H
Sbjct: 317 KVKELGENLPIEDRETIIMNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKENTIEH 376
Query: 186 LIPIFLA 206
L+P+FLA
Sbjct: 377 LLPLFLA 383
>sp|Q09543|2AAA_CAEEL Probable protein phosphatase PP2A regulatory subunit (Protein
phosphatase PP2A regulatory subunit A)
Length = 590
Score = 65.1 bits (157), Expect = 5e-11
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
++++F LP DKR+++I N + K LV + N VK+ LA +MGLAPL+GK+ +
Sbjct: 307 RLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGLAPLIGKEQTVSE 366
Query: 186 LIPIFL 203
L+PI++
Sbjct: 367 LLPIYM 372
>sp|P36179|2AAA_DROME Protein phosphatase PP2A, 65 kDa regulatory subunit (Protein
phosphatase PP2A regulatory subunit A) (PR65)
Length = 591
Score = 62.8 bits (151), Expect = 2e-10
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = +3
Query: 6 KMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDH 185
K+KDFC L + +I++ I P V+ LV + N VK+ LAS +MGL+P+LG ++
Sbjct: 307 KVKDFCANLDKVNQVQIILSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGAYQTVEQ 366
Query: 186 LIPIFL 203
L+P+FL
Sbjct: 367 LLPLFL 372
>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (PR65)
Length = 395
Score = 50.8 bits (120), Expect = 9e-07
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +3
Query: 3 GKMKDFCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVID 182
GK+ F L + + + I P VK L +++ V++ LAS +MG+AP+LGK I+
Sbjct: 109 GKVSKFSRILSPE----LAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIE 164
Query: 183 HLIPIFLA 206
L+PIFL+
Sbjct: 165 QLLPIFLS 172
>sp|Q9UT08|2AAA_SCHPO Protein phosphatase PP2A regulatory subunit A (PR65) (Protein
phosphatase 2A 65 kDa regulatory subunit)
Length = 590
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 18 FCTALPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLIPI 197
FC L DKR +++ +I P ++ L+ + V+ L + LAP LGK+ ++L+P+
Sbjct: 311 FCELL--DKR--IVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPM 366
Query: 198 FL 203
FL
Sbjct: 367 FL 368
>sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory subunit A (PR65)
Length = 635
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +3
Query: 51 SVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLIPIFL 203
S+I+N+I PAV+ L + + V++ LAS++ + LL K VI++ +PI L
Sbjct: 355 SIILNKILPAVQNLSMDESETVRSALASKITNIVLLLNKDQVINNFLPILL 405
>sp|Q9JZ36|FTSK1_NEIMB DNA translocase ftsK 1
Length = 812
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 30 LPSDKRESVIMNQIFPAVKALVQEANMRVKTTLASQVMGLAPLLGKQNVIDHLI 191
LP+DKR+ V++++I + + EA ++ L + G P++G + HL+
Sbjct: 425 LPNDKRQDVMLSEILSS--PVFAEAKSKLTVALGKDIAG-TPVVGDLAKMPHLL 475
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,202,955
Number of Sequences: 369166
Number of extensions: 370810
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)