Planaria EST Database


DrC_02235

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02235
         (384 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47583|RPOB_MYCGE  DNA-directed RNA polymerase beta chain...    31   1.00 
sp|Q923Y9|TAAR1_RAT  Trace amine-associated receptor 1 (Trac...    30   2.2  
sp|P14898|AMY2_DICTH  Alpha-amylase 2 (1,4-alpha-D-glucan gl...    29   3.8  
sp|Q4L5Q4|CARA_STAHJ  Carbamoyl-phosphate synthase small cha...    28   5.0  
sp|Q8SW76|Y311_ENCCU  Hypothetical protein ECU03_0110              28   6.5  
sp|Q96L50|LLR1_HUMAN  Peptidylprolyl isomerase-like 5 (LRR-r...    28   8.5  
sp|Q96B97|SH3K1_HUMAN  SH3-domain kinase binding protein 1 (...    28   8.5  
sp|Q99MV7|RNF17_MOUSE  RING finger protein 17                      28   8.5  
>sp|P47583|RPOB_MYCGE DNA-directed RNA polymerase beta chain (RNAP beta subunit)
           (Transcriptase beta chain) (RNA polymerase beta subunit)
          Length = 1390

 Score = 30.8 bits (68), Expect = 1.00
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +1

Query: 166 MTMSNPPTGQYSYTENGMVALT------PTCNTVWINKAGDNPCY 282
           +TMS+P +G  SY +N  + +T       T N V   ++  N CY
Sbjct: 813 LTMSSPCSGVVSYVDNSKIIITSDSSKKETVNLVKFERSNQNTCY 857
>sp|Q923Y9|TAAR1_RAT Trace amine-associated receptor 1 (Trace amine receptor 1) (TaR-1)
          Length = 332

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 42  LCHNSRSLKHSNSSESKYASWILTTIQSRITMRFVTNNILL 164
           LCHNS ++ H+NS+ S+     L ++ S I +  +  N+++
Sbjct: 3   LCHNSANISHTNSNWSRDVRASLYSLISLIILTTLVGNLIV 43
>sp|P14898|AMY2_DICTH Alpha-amylase 2 (1,4-alpha-D-glucan glucanohydrolase)
          Length = 562

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 304 QILKLEVDSMDYLQLYLSKLYCK*ELTQPCHFQYKSIDQLEDLTWSYNNMLF 149
           +I+K+++  +    LY   LY   E+ +  + QY SID  E   WS  ++++
Sbjct: 89  EIIKIKIPPLKENGLYQIHLY---EMNEKIYEQYLSIDSFEAPLWSEESIIY 137
>sp|Q4L5Q4|CARA_STAHJ Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
           synthetase glutamine chain)
          Length = 366

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 166 MTMSNPPTGQYSYTENGMVALTPTCNTVWINKAGDNP 276
           +T + P  G Y    +   ALTPT N V + +A  +P
Sbjct: 53  ITFTYPLIGNYGINRDDFEALTPTLNGVVVKEASTHP 89
>sp|Q8SW76|Y311_ENCCU Hypothetical protein ECU03_0110
          Length = 267

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 142 LLQTTYYCMTMSNPPTGQYSYTENGMVAL 228
           ++  TY   T  NP TGQ  +T+  + AL
Sbjct: 140 IISPTYLLSTSCNPTTGQIQFTDTAITAL 168
>sp|Q96L50|LLR1_HUMAN Peptidylprolyl isomerase-like 5 (LRR-repeat protein 1) (LRR-1)
           (4-1BB-mediated signaling molecule) (4-1BBlrr)
          Length = 414

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = +2

Query: 26  VSICLIVPQQSI------SQTFKQF*VQICKLDTYNNTIQDHNAICYKQHIIV*PCQILQ 187
           V++C    Q+S+          K   VQ C+L    N   D N       +I  PC+I Q
Sbjct: 217 VALCHSTLQKSLRSLDLSKNKIKALPVQFCQLQELKNLKLDDN------ELIQFPCKIGQ 270

Query: 188 LVNTLILKMAWLR*LLLAIQFG*IKLEII 274
           L+N   L  A  +   L  +F  + LE +
Sbjct: 271 LINLRFLSAARNKLPFLPSEFRNLSLEYL 299
>sp|Q96B97|SH3K1_HUMAN SH3-domain kinase binding protein 1 (Cbl-interacting protein of 85
           kDa) (Human Src-family kinase binding protein 1) (HSB-1)
           (CD2 binding protein 3) (CD2BP3)
          Length = 665

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
 Frame = +1

Query: 1   GFLLIGFMSFDLSDCATTVDLSNIQTVLS-------PNMQAGYLQQYNPGSQCDLLQTTY 159
           G  L G +  DLSD +  +DL    +V+S       P           P SQ  L  ++ 
Sbjct: 443 GSSLSGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQ-SLTSSSL 501

Query: 160 YCMTMSNPPTGQ------YSYTENGMVALTPTCNTVWINKAGDNPCYQPP 291
               + + P+ +       S    G+ A   T  TV I++  DN    PP
Sbjct: 502 SSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVSDNKASLPP 551
>sp|Q99MV7|RNF17_MOUSE RING finger protein 17
          Length = 626

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 220 PCHFQYKSIDQLEDLTWSYNNMLFVTNRIVILD 122
           PCHF  +   Q++D T     M  V NR + LD
Sbjct: 452 PCHFYVRKYSQIKDATILEKKMKQVCNRSLHLD 484
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,277,425
Number of Sequences: 369166
Number of extensions: 858122
Number of successful extensions: 2129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)