Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_P06
(384 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47583|RPOB_MYCGE DNA-directed RNA polymerase beta chain... 31 1.00
sp|Q923Y9|TAAR1_RAT Trace amine-associated receptor 1 (Trac... 30 2.2
sp|P14898|AMY2_DICTH Alpha-amylase 2 (1,4-alpha-D-glucan gl... 29 3.8
sp|Q4L5Q4|CARA_STAHJ Carbamoyl-phosphate synthase small cha... 28 5.0
sp|Q8SW76|Y311_ENCCU Hypothetical protein ECU03_0110 28 6.5
sp|Q96L50|LLR1_HUMAN Peptidylprolyl isomerase-like 5 (LRR-r... 28 8.5
sp|Q96B97|SH3K1_HUMAN SH3-domain kinase binding protein 1 (... 28 8.5
sp|Q99MV7|RNF17_MOUSE RING finger protein 17 28 8.5
>sp|P47583|RPOB_MYCGE DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1390
Score = 30.8 bits (68), Expect = 1.00
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +1
Query: 166 MTMSNPPTGQYSYTENGMVALT------PTCNTVWINKAGDNPCY 282
+TMS+P +G SY +N + +T T N V ++ N CY
Sbjct: 813 LTMSSPCSGVVSYVDNSKIIITSDSSKKETVNLVKFERSNQNTCY 857
>sp|Q923Y9|TAAR1_RAT Trace amine-associated receptor 1 (Trace amine receptor 1) (TaR-1)
Length = 332
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 42 LCHNSRSLKHSNSSESKYASWILTTIQSRITMRFVTNNILL 164
LCHNS ++ H+NS+ S+ L ++ S I + + N+++
Sbjct: 3 LCHNSANISHTNSNWSRDVRASLYSLISLIILTTLVGNLIV 43
>sp|P14898|AMY2_DICTH Alpha-amylase 2 (1,4-alpha-D-glucan glucanohydrolase)
Length = 562
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 304 QILKLEVDSMDYLQLYLSKLYCK*ELTQPCHFQYKSIDQLEDLTWSYNNMLF 149
+I+K+++ + LY LY E+ + + QY SID E WS ++++
Sbjct: 89 EIIKIKIPPLKENGLYQIHLY---EMNEKIYEQYLSIDSFEAPLWSEESIIY 137
>sp|Q4L5Q4|CARA_STAHJ Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 366
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 166 MTMSNPPTGQYSYTENGMVALTPTCNTVWINKAGDNP 276
+T + P G Y + ALTPT N V + +A +P
Sbjct: 53 ITFTYPLIGNYGINRDDFEALTPTLNGVVVKEASTHP 89
>sp|Q8SW76|Y311_ENCCU Hypothetical protein ECU03_0110
Length = 267
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 142 LLQTTYYCMTMSNPPTGQYSYTENGMVAL 228
++ TY T NP TGQ +T+ + AL
Sbjct: 140 IISPTYLLSTSCNPTTGQIQFTDTAITAL 168
>sp|Q96L50|LLR1_HUMAN Peptidylprolyl isomerase-like 5 (LRR-repeat protein 1) (LRR-1)
(4-1BB-mediated signaling molecule) (4-1BBlrr)
Length = 414
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = +2
Query: 26 VSICLIVPQQSI------SQTFKQF*VQICKLDTYNNTIQDHNAICYKQHIIV*PCQILQ 187
V++C Q+S+ K VQ C+L N D N +I PC+I Q
Sbjct: 217 VALCHSTLQKSLRSLDLSKNKIKALPVQFCQLQELKNLKLDDN------ELIQFPCKIGQ 270
Query: 188 LVNTLILKMAWLR*LLLAIQFG*IKLEII 274
L+N L A + L +F + LE +
Sbjct: 271 LINLRFLSAARNKLPFLPSEFRNLSLEYL 299
>sp|Q96B97|SH3K1_HUMAN SH3-domain kinase binding protein 1 (Cbl-interacting protein of 85
kDa) (Human Src-family kinase binding protein 1) (HSB-1)
(CD2 binding protein 3) (CD2BP3)
Length = 665
Score = 27.7 bits (60), Expect = 8.5
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Frame = +1
Query: 1 GFLLIGFMSFDLSDCATTVDLSNIQTVLS-------PNMQAGYLQQYNPGSQCDLLQTTY 159
G L G + DLSD + +DL +V+S P P SQ L ++
Sbjct: 443 GSSLSGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQ-SLTSSSL 501
Query: 160 YCMTMSNPPTGQ------YSYTENGMVALTPTCNTVWINKAGDNPCYQPP 291
+ + P+ + S G+ A T TV I++ DN PP
Sbjct: 502 SSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVSDNKASLPP 551
>sp|Q99MV7|RNF17_MOUSE RING finger protein 17
Length = 626
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 220 PCHFQYKSIDQLEDLTWSYNNMLFVTNRIVILD 122
PCHF + Q++D T M V NR + LD
Sbjct: 452 PCHFYVRKYSQIKDATILEKKMKQVCNRSLHLD 484
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,277,425
Number of Sequences: 369166
Number of extensions: 858122
Number of successful extensions: 2129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2127
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)