Planaria EST Database


DrC_02229

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02229
         (323 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YT39|MTX4_GRASP  Toxin GsMTx-4 precursor (MTx4)               30   2.2  
sp|P92127|VS41_GIALA  Variant-specific surface protein VSP4A...    30   2.2  
sp|P47050|CUL8_YEAST  Cullin-8                                     29   3.8  
sp|Q8YHP8|RPOB_BRUME  DNA-directed RNA polymerase beta chain...    28   5.0  
sp|Q9Y2K7|FXL11_HUMAN  F-box/LRR-repeat protein 11 (F-box an...    28   6.5  
sp|Q12751|YM48_YEAST  Hypothetical 113.2 kDa protein in SSO2...    28   6.5  
sp|P59997|FXL11_MOUSE  F-box/LRR-repeat protein 11 (F-box an...    28   6.5  
sp|P16024|RPOC1_MAIZE  DNA-directed RNA polymerase beta' cha...    28   8.5  
sp|P47486|UVRD_MYCGE  Probable DNA helicase II homolog             28   8.5  
sp|Q89AG4|Y330_BUCBP  Hypothetical UPF0176 protein bbp330          28   8.5  
>sp|Q7YT39|MTX4_GRASP Toxin GsMTx-4 precursor (MTx4)
          Length = 82

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 204 KCTDRQNSCVTTKI*KVNFSCEKFFKICKFAFNK 305
           KC    + C   K+      C K FK+C F+F K
Sbjct: 54  KCNPNDDKCCRPKL-----KCSKLFKLCNFSFGK 82
>sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A1 precursor (CRISP-90)
          Length = 687

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 126 CTD--RSTKKCSQTECTVCTTKVEDVLGKCTDRQNSCVTTKI*KVNFSCEK 272
           CT+    T K S TEC  C +      G+  ++  SC T K  K N   EK
Sbjct: 174 CTECMAGTYKKSDTECAACHSDCATCSGEANNQCTSCETGKYLKSNQCVEK 224
>sp|P47050|CUL8_YEAST Cullin-8
          Length = 842

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -2

Query: 283 ILKNFSHEKFTF*IFVVTQLF-CLSVHLPSTSSTLVVQTVHSVCEHF-----LVDLSVQT 122
           I K    E  T   +  ++LF C+  H     STLV  T+H     F     +++  V  
Sbjct: 188 IRKELGFETLTIFQYYDSKLFECMKSHFGREFSTLVSATIHHYIHMFPITNTMLEKEVPM 247

Query: 121 FFILSNFTFSI 89
             I+SN  FSI
Sbjct: 248 LRIMSNCNFSI 258
>sp|Q8YHP8|RPOB_BRUME DNA-directed RNA polymerase beta chain (RNAP beta subunit)
           (Transcriptase beta chain) (RNA polymerase beta subunit)
          Length = 1377

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 36  TAEPRKESKKLSDLLDSDIENVKFESMKKVCTDRSTKKCSQTECTVCTTKVEDVLG 203
           +AE  K  K +SDL+D+D   V  E+ KK+ T R+ K+ ++          +D+ G
Sbjct: 250 SAERFKGMKIISDLVDADTGEVVLEAGKKL-TARAAKQLAEKGLKAIKATEDDLFG 304
>sp|Q9Y2K7|FXL11_HUMAN F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
            11) (F-box protein FBL7) (F-box protein Lilina)
          Length = 1162

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 175  QTVHSVCEHFLVDLSVQTFFILSN 104
            Q     CEHF+ DLS+ + + LS+
Sbjct: 1131 QITRKACEHFISDLSINSLYCLSD 1154
>sp|Q12751|YM48_YEAST Hypothetical 113.2 kDa protein in SSO2-HSC82 intergenic region
          Length = 981

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = -2

Query: 319 TENVFLLKANLQILKNFSHEKFTF*IFVVTQLFCLSVHLPSTSSTLVVQ-TVHSVCEHFL 143
           TEN   L      L NF HEK+ + I + TQL  +SV     +     + + +S    FL
Sbjct: 466 TENFQYLNVLSLNLLNFEHEKWKYLIDLDTQLPYISVKNTDMAELFFEKGSKNSQISEFL 525

Query: 142 --VDLSVQTFFILSNFTFSISESKRSES-FLD 56
             +DLS++ F     F   +++ ++S++ FLD
Sbjct: 526 QDMDLSIELFM---EFLVLLNDEEQSKTLFLD 554
>sp|P59997|FXL11_MOUSE F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
           11)
          Length = 560

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 175 QTVHSVCEHFLVDLSVQTFFILSN 104
           Q     CEHF+ DLS+ + + LS+
Sbjct: 529 QITRKACEHFISDLSINSLYCLSD 552
>sp|P16024|RPOC1_MAIZE DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
           polymerase beta' subunit) (RNA polymerase beta' subunit)
          Length = 683

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 LGKCTDRQNSCVTTKI*KVNFSCEKFFKICK 290
           LG C +R NSC  +   KVN++   ++K  K
Sbjct: 548 LGICANRYNSCGNSPNKKVNYNNNNYYKYTK 578
>sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog
          Length = 703

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 178 VQTVHSVCEHFLVDLSVQTFFILSNFTFSISESKRSESFLDSFLGSAVIELNRNKNIL 5
           + T HS C  FL+    + F I  + ++          FL  FL  + +++N  K I+
Sbjct: 79  IYTFHSFCNKFLIQTLKKRFIIDDDISY----------FLKEFLADSKLDINLAKQII 126
>sp|Q89AG4|Y330_BUCBP Hypothetical UPF0176 protein bbp330
          Length = 312

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 81  DSDIEN--VKFESMKKVCTDRSTKKCSQTECTVCTTKVEDVLGKCTDRQNSCVTTKI*KV 254
           D+ IEN  VKF     V  +R ++  S+           DVL KC   +N C  T +   
Sbjct: 233 DARIENLLVKFRGKNFVFDERMSEVVSK-----------DVLSKCDQCENLC-DTYVNCF 280

Query: 255 NFSCEKFFKICKFAFNK 305
           N  C   F  C F   K
Sbjct: 281 NSRCHNLFIQCNFCRKK 297
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,430,724
Number of Sequences: 369166
Number of extensions: 583401
Number of successful extensions: 1774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)