Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N17
(323 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7YT39|MTX4_GRASP Toxin GsMTx-4 precursor (MTx4) 30 2.2
sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A... 30 2.2
sp|P47050|CUL8_YEAST Cullin-8 29 3.8
sp|Q8YHP8|RPOB_BRUME DNA-directed RNA polymerase beta chain... 28 5.0
sp|Q9Y2K7|FXL11_HUMAN F-box/LRR-repeat protein 11 (F-box an... 28 6.5
sp|Q12751|YM48_YEAST Hypothetical 113.2 kDa protein in SSO2... 28 6.5
sp|P59997|FXL11_MOUSE F-box/LRR-repeat protein 11 (F-box an... 28 6.5
sp|P16024|RPOC1_MAIZE DNA-directed RNA polymerase beta' cha... 28 8.5
sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog 28 8.5
sp|Q89AG4|Y330_BUCBP Hypothetical UPF0176 protein bbp330 28 8.5
>sp|Q7YT39|MTX4_GRASP Toxin GsMTx-4 precursor (MTx4)
Length = 82
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 204 KCTDRQNSCVTTKI*KVNFSCEKFFKICKFAFNK 305
KC + C K+ C K FK+C F+F K
Sbjct: 54 KCNPNDDKCCRPKL-----KCSKLFKLCNFSFGK 82
>sp|P92127|VS41_GIALA Variant-specific surface protein VSP4A1 precursor (CRISP-90)
Length = 687
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 126 CTD--RSTKKCSQTECTVCTTKVEDVLGKCTDRQNSCVTTKI*KVNFSCEK 272
CT+ T K S TEC C + G+ ++ SC T K K N EK
Sbjct: 174 CTECMAGTYKKSDTECAACHSDCATCSGEANNQCTSCETGKYLKSNQCVEK 224
>sp|P47050|CUL8_YEAST Cullin-8
Length = 842
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = -2
Query: 283 ILKNFSHEKFTF*IFVVTQLF-CLSVHLPSTSSTLVVQTVHSVCEHF-----LVDLSVQT 122
I K E T + ++LF C+ H STLV T+H F +++ V
Sbjct: 188 IRKELGFETLTIFQYYDSKLFECMKSHFGREFSTLVSATIHHYIHMFPITNTMLEKEVPM 247
Query: 121 FFILSNFTFSI 89
I+SN FSI
Sbjct: 248 LRIMSNCNFSI 258
>sp|Q8YHP8|RPOB_BRUME DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1377
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 36 TAEPRKESKKLSDLLDSDIENVKFESMKKVCTDRSTKKCSQTECTVCTTKVEDVLG 203
+AE K K +SDL+D+D V E+ KK+ T R+ K+ ++ +D+ G
Sbjct: 250 SAERFKGMKIISDLVDADTGEVVLEAGKKL-TARAAKQLAEKGLKAIKATEDDLFG 304
>sp|Q9Y2K7|FXL11_HUMAN F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
11) (F-box protein FBL7) (F-box protein Lilina)
Length = 1162
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 175 QTVHSVCEHFLVDLSVQTFFILSN 104
Q CEHF+ DLS+ + + LS+
Sbjct: 1131 QITRKACEHFISDLSINSLYCLSD 1154
>sp|Q12751|YM48_YEAST Hypothetical 113.2 kDa protein in SSO2-HSC82 intergenic region
Length = 981
Score = 28.1 bits (61), Expect = 6.5
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = -2
Query: 319 TENVFLLKANLQILKNFSHEKFTF*IFVVTQLFCLSVHLPSTSSTLVVQ-TVHSVCEHFL 143
TEN L L NF HEK+ + I + TQL +SV + + + +S FL
Sbjct: 466 TENFQYLNVLSLNLLNFEHEKWKYLIDLDTQLPYISVKNTDMAELFFEKGSKNSQISEFL 525
Query: 142 --VDLSVQTFFILSNFTFSISESKRSES-FLD 56
+DLS++ F F +++ ++S++ FLD
Sbjct: 526 QDMDLSIELFM---EFLVLLNDEEQSKTLFLD 554
>sp|P59997|FXL11_MOUSE F-box/LRR-repeat protein 11 (F-box and leucine-rich repeat protein
11)
Length = 560
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 175 QTVHSVCEHFLVDLSVQTFFILSN 104
Q CEHF+ DLS+ + + LS+
Sbjct: 529 QITRKACEHFISDLSINSLYCLSD 552
>sp|P16024|RPOC1_MAIZE DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA
polymerase beta' subunit) (RNA polymerase beta' subunit)
Length = 683
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 198 LGKCTDRQNSCVTTKI*KVNFSCEKFFKICK 290
LG C +R NSC + KVN++ ++K K
Sbjct: 548 LGICANRYNSCGNSPNKKVNYNNNNYYKYTK 578
>sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog
Length = 703
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -2
Query: 178 VQTVHSVCEHFLVDLSVQTFFILSNFTFSISESKRSESFLDSFLGSAVIELNRNKNIL 5
+ T HS C FL+ + F I + ++ FL FL + +++N K I+
Sbjct: 79 IYTFHSFCNKFLIQTLKKRFIIDDDISY----------FLKEFLADSKLDINLAKQII 126
>sp|Q89AG4|Y330_BUCBP Hypothetical UPF0176 protein bbp330
Length = 312
Score = 27.7 bits (60), Expect = 8.5
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +3
Query: 81 DSDIEN--VKFESMKKVCTDRSTKKCSQTECTVCTTKVEDVLGKCTDRQNSCVTTKI*KV 254
D+ IEN VKF V +R ++ S+ DVL KC +N C T +
Sbjct: 233 DARIENLLVKFRGKNFVFDERMSEVVSK-----------DVLSKCDQCENLC-DTYVNCF 280
Query: 255 NFSCEKFFKICKFAFNK 305
N C F C F K
Sbjct: 281 NSRCHNLFIQCNFCRKK 297
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,430,724
Number of Sequences: 369166
Number of extensions: 583401
Number of successful extensions: 1774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 68,354,980
effective HSP length: 76
effective length of database: 54,315,120
effective search space used: 1683768720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)