Planaria EST Database


DrC_02225

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02225
         (421 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48608|DIA_DROME  Diaphanous protein                            30   1.6  
sp|O14057|GUAD_SCHPO  Probable guanine deaminase (Guanase) (...    30   2.0  
sp|Q26974|DECA_TRICA  Decapentaplegic protein precursor            29   3.5  
sp|P18250|LEU2_PHYBL  3-isopropylmalate dehydratase (Isoprop...    29   3.5  
sp|P55811|LEU2_RHINI  3-isopropylmalate dehydratase (Isoprop...    29   4.5  
sp|P59863|SIX2_BUTOC  Insect toxin 2 (Bot IT2) (BotIT2)            28   5.9  
sp|P17279|LEU2_RHIRA  3-isopropylmalate dehydratase (Isoprop...    28   7.7  
sp|P37539|YAAR_BACSU  Hypothetical protein yaaR                    28   7.7  
sp|Q6MHW4|KITH_BDEBA  Thymidine kinase                             28   7.7  
>sp|P48608|DIA_DROME Diaphanous protein
          Length = 1091

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 210  DDRFSEIMSPFITTVKEQ-*YCRTFQTKMTEHLKLVSEYLHFN-HHHIRSRLFSDMAKFR 383
            DD+FSE+M  F    ++Q       Q +M +  K +SEY  F+   +     F+D+  F+
Sbjct: 913  DDKFSEVMGKFAEECRQQVDVLGKMQLQMEKLYKDLSEYYAFDPSKYTMEEFFADIKTFK 972

Query: 384  QIYRSRTN 407
              +++  N
Sbjct: 973  DAFQAAHN 980
>sp|O14057|GUAD_SCHPO Probable guanine deaminase (Guanase) (Guanine aminase) (Guanine
           aminohydrolase) (GAH)
          Length = 527

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 112 KSAHFHVREPYQFVNPGLKTLEYHIKSFRSSGEMIDFP 225
           K A  H  +P QF+ PGL     H   + +SG  ID P
Sbjct: 58  KEATIHKLKPLQFMFPGLIDTHIHAPQYPNSGIGIDVP 95
>sp|Q26974|DECA_TRICA Decapentaplegic protein precursor
          Length = 372

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  SANMEIPCVYSNSANSKSAHFHVREPY--QFVNPGLKTLEYHIKS 192
           +A++ +P +Y+ SAN+  +  HV  P   +FV+P    L+++I S
Sbjct: 69  TASLPLPGLYTKSANTIRSFTHVESPIDEKFVHPHRFRLKFNISS 113
>sp|P18250|LEU2_PHYBL 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
           (Alpha-IPM isomerase) (IPMI)
          Length = 744

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 60  VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
           +IG  G   CV+EF      SLS E  +SIC    E
Sbjct: 184 LIGTAGGTRCVIEFCGSAIASLSMEARMSICNMSIE 219
>sp|P55811|LEU2_RHINI 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
           (Alpha-IPM isomerase) (IPMI)
          Length = 750

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 60  VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
           VIG  G   CV+EF      SLS E  +SIC    E
Sbjct: 196 VIGTAGGTGCVIEFCGEANESLSMESRMSICNMSIE 231
>sp|P59863|SIX2_BUTOC Insect toxin 2 (Bot IT2) (BotIT2)
          Length = 60

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 23  GYCWKSG---WIETVGNRRIWKSHVCT 94
           GYCWK G   W E + + + WKS   T
Sbjct: 33  GYCWKWGLACWCEDLPDEKRWKSETNT 59
>sp|P17279|LEU2_RHIRA 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
           (Alpha-IPM isomerase) (IPMI)
          Length = 644

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 60  VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
           VIG  G   CV+EF      +LS E  +SIC    E
Sbjct: 243 VIGTAGGTGCVIEFCGDTIAALSMESRMSICNMSIE 278
>sp|P37539|YAAR_BACSU Hypothetical protein yaaR
          Length = 146

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 222 SEIMSPFITTVKEQ*YCRTFQTKMTEHLKLVSEYLHFNHHHIRSRLFSDMAKFRQIYR 395
           SEI + F T+++ Q    + + K+ +  +L+S+   F     +SR F D+A+F+ + +
Sbjct: 22  SEITASFKTSMENQ----SSKMKLDQLTRLLSDIEAFGKRLTKSRNFKDLARFKGLVK 75
>sp|Q6MHW4|KITH_BDEBA Thymidine kinase
          Length = 204

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 148 IDKVPSHESEHFWNLLNSST 89
           ID  P H++E  WNLL  +T
Sbjct: 66  IDSTPIHDAEEIWNLLKPNT 85
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,319,089
Number of Sequences: 369166
Number of extensions: 886951
Number of successful extensions: 2313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)