Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_M19
(421 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48608|DIA_DROME Diaphanous protein 30 1.6
sp|O14057|GUAD_SCHPO Probable guanine deaminase (Guanase) (... 30 2.0
sp|Q26974|DECA_TRICA Decapentaplegic protein precursor 29 3.5
sp|P18250|LEU2_PHYBL 3-isopropylmalate dehydratase (Isoprop... 29 3.5
sp|P55811|LEU2_RHINI 3-isopropylmalate dehydratase (Isoprop... 29 4.5
sp|P59863|SIX2_BUTOC Insect toxin 2 (Bot IT2) (BotIT2) 28 5.9
sp|P17279|LEU2_RHIRA 3-isopropylmalate dehydratase (Isoprop... 28 7.7
sp|P37539|YAAR_BACSU Hypothetical protein yaaR 28 7.7
sp|Q6MHW4|KITH_BDEBA Thymidine kinase 28 7.7
>sp|P48608|DIA_DROME Diaphanous protein
Length = 1091
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 210 DDRFSEIMSPFITTVKEQ-*YCRTFQTKMTEHLKLVSEYLHFN-HHHIRSRLFSDMAKFR 383
DD+FSE+M F ++Q Q +M + K +SEY F+ + F+D+ F+
Sbjct: 913 DDKFSEVMGKFAEECRQQVDVLGKMQLQMEKLYKDLSEYYAFDPSKYTMEEFFADIKTFK 972
Query: 384 QIYRSRTN 407
+++ N
Sbjct: 973 DAFQAAHN 980
>sp|O14057|GUAD_SCHPO Probable guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH)
Length = 527
Score = 30.0 bits (66), Expect = 2.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 112 KSAHFHVREPYQFVNPGLKTLEYHIKSFRSSGEMIDFP 225
K A H +P QF+ PGL H + +SG ID P
Sbjct: 58 KEATIHKLKPLQFMFPGLIDTHIHAPQYPNSGIGIDVP 95
>sp|Q26974|DECA_TRICA Decapentaplegic protein precursor
Length = 372
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 64 SANMEIPCVYSNSANSKSAHFHVREPY--QFVNPGLKTLEYHIKS 192
+A++ +P +Y+ SAN+ + HV P +FV+P L+++I S
Sbjct: 69 TASLPLPGLYTKSANTIRSFTHVESPIDEKFVHPHRFRLKFNISS 113
>sp|P18250|LEU2_PHYBL 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
(Alpha-IPM isomerase) (IPMI)
Length = 744
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 60 VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
+IG G CV+EF SLS E +SIC E
Sbjct: 184 LIGTAGGTRCVIEFCGSAIASLSMEARMSICNMSIE 219
>sp|P55811|LEU2_RHINI 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
(Alpha-IPM isomerase) (IPMI)
Length = 750
Score = 28.9 bits (63), Expect = 4.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 60 VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
VIG G CV+EF SLS E +SIC E
Sbjct: 196 VIGTAGGTGCVIEFCGEANESLSMESRMSICNMSIE 231
>sp|P59863|SIX2_BUTOC Insect toxin 2 (Bot IT2) (BotIT2)
Length = 60
Score = 28.5 bits (62), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 23 GYCWKSG---WIETVGNRRIWKSHVCT 94
GYCWK G W E + + + WKS T
Sbjct: 33 GYCWKWGLACWCEDLPDEKRWKSETNT 59
>sp|P17279|LEU2_RHIRA 3-isopropylmalate dehydratase (Isopropylmalate isomerase)
(Alpha-IPM isomerase) (IPMI)
Length = 644
Score = 28.1 bits (61), Expect = 7.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 60 VIGEYGNPMCVLEFSKFQKCSLSCEGTLSICKSWFE 167
VIG G CV+EF +LS E +SIC E
Sbjct: 243 VIGTAGGTGCVIEFCGDTIAALSMESRMSICNMSIE 278
>sp|P37539|YAAR_BACSU Hypothetical protein yaaR
Length = 146
Score = 28.1 bits (61), Expect = 7.7
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 222 SEIMSPFITTVKEQ*YCRTFQTKMTEHLKLVSEYLHFNHHHIRSRLFSDMAKFRQIYR 395
SEI + F T+++ Q + + K+ + +L+S+ F +SR F D+A+F+ + +
Sbjct: 22 SEITASFKTSMENQ----SSKMKLDQLTRLLSDIEAFGKRLTKSRNFKDLARFKGLVK 75
>sp|Q6MHW4|KITH_BDEBA Thymidine kinase
Length = 204
Score = 28.1 bits (61), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 148 IDKVPSHESEHFWNLLNSST 89
ID P H++E WNLL +T
Sbjct: 66 IDSTPIHDAEEIWNLLKPNT 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,319,089
Number of Sequences: 369166
Number of extensions: 886951
Number of successful extensions: 2313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)