Planaria EST Database


DrC_02223

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02223
         (640 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HGQ3|YLH3_SCHPO  Hypothetical transport protein C17D4.0...    34   0.36 
sp|Q9ZDS1|LPXC_RICPR  UDP-3-O-[3-hydroxymyristoyl] N-acetylg...    31   3.1  
sp|P34266|PGL2_CAEEL  P granule abnormality protein 2              30   6.8  
sp|P09790|IGA_NEIGO  IgA-specific serine endopeptidase precu...    29   8.9  
>sp|Q9HGQ3|YLH3_SCHPO Hypothetical transport protein C17D4.03c in chromosome I
          Length = 732

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 260 NDRSFSQTELMESNVQEEFHEEIQSEKFI--VNRKCSHSESSLDHMQIDH 403
           ND   SQ E    N QE  HE   +   I   N KC H   SL ++  DH
Sbjct: 523 NDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDH 572
>sp|Q9ZDS1|LPXC_RICPR UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
           (UDP-3-O-acyl-GlcNAc deacetylase)
          Length = 288

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 323 EIQSEKFIVNRKCSHSESSLDHMQIDHTSTFDSKP-PKVSISSQLRRSFRKIIVKNKSFN 499
           +I  E  +VN+ C    +  +HM +D T  F SK   + ++S  ++ SF K I   ++F 
Sbjct: 131 KILKEVKVVNKDCELYCTPSEHMAVDLTIDFSSKAIGRQNLSFGMQESFTKNIADARTFG 190

Query: 500 KYQDL 514
             +D+
Sbjct: 191 FIRDV 195
>sp|P34266|PGL2_CAEEL P granule abnormality protein 2
          Length = 532

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 257 INDRSFSQTELMESNVQEEFHEEIQSEKFIVNRKCSHSESSLDHMQIDHTSTF--DSKPP 430
           +N R   Q + ++ N+Q+    E  SEKF +    S+S    D  Q +    F  +SK P
Sbjct: 438 VNFRKIPQKDWLDGNLQKALKTEPTSEKFGI----SNSLKIKDENQRNQIRGFKDNSKEP 493

Query: 431 KVSISSQLRRSFRKI 475
              +S++    F+++
Sbjct: 494 NAKVSARFGSKFQRV 508
>sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase precursor (IgA protease)
          Length = 1532

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 254  LINDRSFSQTELMESNVQEEFHEEIQSEKFIVNRKCSHSESSLDHMQIDHTSTFDSKP 427
            LIND      E +E   +EE  +  Q      NR+   SE S D    +  ST D  P
Sbjct: 1154 LINDYEEIPLEELEDEAEEERRQATQFHSKSRNRRAISSEPSSDEDASESVSTSDKHP 1211
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,283,729
Number of Sequences: 369166
Number of extensions: 1023395
Number of successful extensions: 2556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2555
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)