Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_L23
(640 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9HGQ3|YLH3_SCHPO Hypothetical transport protein C17D4.0... 34 0.36
sp|Q9ZDS1|LPXC_RICPR UDP-3-O-[3-hydroxymyristoyl] N-acetylg... 31 3.1
sp|P34266|PGL2_CAEEL P granule abnormality protein 2 30 6.8
sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase precu... 29 8.9
>sp|Q9HGQ3|YLH3_SCHPO Hypothetical transport protein C17D4.03c in chromosome I
Length = 732
Score = 33.9 bits (76), Expect = 0.36
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 NDRSFSQTELMESNVQEEFHEEIQSEKFI--VNRKCSHSESSLDHMQIDH 403
ND SQ E N QE HE + I N KC H SL ++ DH
Sbjct: 523 NDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDH 572
>sp|Q9ZDS1|LPXC_RICPR UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
(UDP-3-O-acyl-GlcNAc deacetylase)
Length = 288
Score = 30.8 bits (68), Expect = 3.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 323 EIQSEKFIVNRKCSHSESSLDHMQIDHTSTFDSKP-PKVSISSQLRRSFRKIIVKNKSFN 499
+I E +VN+ C + +HM +D T F SK + ++S ++ SF K I ++F
Sbjct: 131 KILKEVKVVNKDCELYCTPSEHMAVDLTIDFSSKAIGRQNLSFGMQESFTKNIADARTFG 190
Query: 500 KYQDL 514
+D+
Sbjct: 191 FIRDV 195
>sp|P34266|PGL2_CAEEL P granule abnormality protein 2
Length = 532
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 257 INDRSFSQTELMESNVQEEFHEEIQSEKFIVNRKCSHSESSLDHMQIDHTSTF--DSKPP 430
+N R Q + ++ N+Q+ E SEKF + S+S D Q + F +SK P
Sbjct: 438 VNFRKIPQKDWLDGNLQKALKTEPTSEKFGI----SNSLKIKDENQRNQIRGFKDNSKEP 493
Query: 431 KVSISSQLRRSFRKI 475
+S++ F+++
Sbjct: 494 NAKVSARFGSKFQRV 508
>sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase precursor (IgA protease)
Length = 1532
Score = 29.3 bits (64), Expect = 8.9
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 254 LINDRSFSQTELMESNVQEEFHEEIQSEKFIVNRKCSHSESSLDHMQIDHTSTFDSKP 427
LIND E +E +EE + Q NR+ SE S D + ST D P
Sbjct: 1154 LINDYEEIPLEELEDEAEEERRQATQFHSKSRNRRAISSEPSSDEDASESVSTSDKHP 1211
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,283,729
Number of Sequences: 369166
Number of extensions: 1023395
Number of successful extensions: 2556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2555
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)