Planaria EST Database


DrC_02216

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02216
         (528 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21223|OMP7_STAAU  65 kDa outer membrane protein precurso...    33   0.42 
sp|P38536|APU_THETU  Amylopullulanase precursor (Alpha-amyla...    32   0.72 
sp|P24764|VA39_VACCV  Protein A39                                  32   0.95 
sp|Q5HEI2|OMP7_STAAC  77 kDa outer membrane protein precursor      32   1.2  
sp|Q24134|NELFD_DROME  Negative elongation factor D                31   1.6  
sp|P21062|VA39_VACCC  Protein A39                                  31   1.6  
sp|Q02001|TRPE_LACLA  Anthranilate synthase component I            31   1.6  
sp|Q11068|MGAT1_CAEEL  Putative alpha-1,3-mannosyl-glycoprot...    31   1.6  
sp|P70478|APC_RAT  Adenomatous polyposis coli protein (APC p...    30   2.8  
sp|Q9PA89|RS7_XYLFA  30S ribosomal protein S7                      30   2.8  
>sp|P21223|OMP7_STAAU 65 kDa outer membrane protein precursor (map-ND2C)
          Length = 584

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = +1

Query: 25  VRVNNDTKETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSYNGRTYEGFEDLPID 204
           + VN  ++   SS   N N+  + K L+  V   L     I  +         +      
Sbjct: 55  ITVNGTSQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTV---- 110

Query: 205 YMKNGDTLSLLIDQKLKVDVYTNGDNKTKPYRVECSYMDTSEELSDRVKDRLPYGT-NDI 381
           Y KNG     +ID  LKV +YT     T   +     +DT +++ D+ KD+  Y     I
Sbjct: 111 YFKNGT--KKVID--LKVGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTI 166

Query: 382 VLTSDGSNLLNGVSLAK 432
            +     N+L+ ++  K
Sbjct: 167 TVNGTSQNILSNLTFNK 183
>sp|P38536|APU_THETU Amylopullulanase precursor (Alpha-amylase/pullulanase) (Pullulanase
            type II) [Includes: Alpha-amylase (1,4-alpha-D-glucan
            glucanohydrolase); Pullulanase (1,4-alpha-D-glucan
            glucanohydrolase) (Alpha-dextrin
            endo-1,6-alpha-glucosidase)]
          Length = 1861

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
 Frame = +1

Query: 34   NNDTKETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSYNGRTYEGFEDLPIDYMK 213
            NN+T  + S+     +  T   S+   +    + S  I  ++ NG        L +D  K
Sbjct: 1458 NNNTSTSGSNSSSTGSGSTGSTSITSNISNTSNTSNTIGVITKNGNVIT----LTLDAGK 1513

Query: 214  NGDTLSLLIDQKLKVDVYTNGDNKTKPYRVECSYMDTSEELSDRVKDRLPYGTN-DIVLT 390
              D +    D+K+  D+ T G+ + K  ++    +DTS   +   KD +    N  I LT
Sbjct: 1514 AKDLIVNSKDKKVVFDITTIGEGQQKVVQISKDILDTS---AANGKDIVIKSDNASIALT 1570

Query: 391  SDGSN---LLNGVSLA 429
             D  N   + NGV+++
Sbjct: 1571 KDALNQNQIQNGVNVS 1586
>sp|P24764|VA39_VACCV Protein A39
          Length = 441

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +1

Query: 139 EDIKALSYNGRTYEGFEDLPIDYMKNGDTLSLLIDQKLKV-----DVYTNGDNKTKPYRV 303
           +D+     NG  Y  F +  ++  K G T +  I   +KV     D    G N   P   
Sbjct: 71  DDVLYTGVNGAVYT-FSNNKLN--KTGLTNNNYITTSIKVEDADKDTLVCGTNNGNP--- 124

Query: 304 ECSYMDTSEELSDRVKDRLPYGTNDIVLTSDGSNLLNGVSLAKQGMK 444
           +C  +D S++   R +   PY  + + + S    +L+ ++++K+G+K
Sbjct: 125 KCWKIDGSDDPKHRGRGYAPYQNSKVTIISHNGCVLSDINISKEGIK 171
>sp|Q5HEI2|OMP7_STAAC 77 kDa outer membrane protein precursor
          Length = 684

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
 Frame = +1

Query: 25  VRVNNDTKETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSYNGRTYEGFEDLPID 204
           + VN  ++   SS   N N+  + K L+  V   L     I  +         +      
Sbjct: 55  ITVNGTSQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTV---- 110

Query: 205 YMKNGDTLSLLIDQKLKVDVYTNGDNKTKPYRVECSYMDTSEELSDRVKDRLPYGT-NDI 381
           Y KNG     +ID  LK  +YT     T   +     +DT +++ D+ KD+  Y     I
Sbjct: 111 YFKNGT--KKVID--LKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTI 166

Query: 382 VLTSDGSNLLNGVSLAK 432
            +     N+L+ ++  K
Sbjct: 167 TVNGTSQNILSNLTFNK 183
>sp|Q24134|NELFD_DROME Negative elongation factor D
          Length = 578

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 169 RTYEGFEDLPIDYMKNGDTLSLLIDQKLKVDVYTNGDNKTK 291
           R Y G +  PID ++N   L LL+D   +  V  N ++K K
Sbjct: 302 RNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPK 342
>sp|P21062|VA39_VACCC Protein A39
          Length = 403

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +1

Query: 139 EDIKALSYNGRTYEGFEDLPIDYMKNGDTLSLLIDQKLKV-----DVYTNGDNKTKPYRV 303
           +D+     NG  Y  F +  ++  K G T +  I   +KV     D    G N   P   
Sbjct: 33  DDVLYTGVNGAVYT-FSNNKLN--KTGLTNNNYITTSIKVEDADKDTLVCGTNNGNP--- 86

Query: 304 ECSYMDTSEELSDRVKDRLPYGTNDIVLTSDGSNLLNGVSLAKQGMK 444
           +C  +D S++   R +   PY  + + + S    +L+ ++++K+G+K
Sbjct: 87  KCWKIDGSDDPKHRGRGYAPYQNSKVTIISYNECVLSDINISKEGIK 133
>sp|Q02001|TRPE_LACLA Anthranilate synthase component I
          Length = 456

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
 Frame = +1

Query: 10  RHEEIVRVNNDTKETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSYNGRTYEGFE 189
           + E+++ + ++T    S  ++      NI+SL          +E  K    +  + E FE
Sbjct: 139 KREKLIFIEDNTYSQRSEKELQNALSANIESLSLLTEAENELTELSKLNFVSNMSQELFE 198

Query: 190 DLPI---DYMKNGDTLSLLIDQKLKVDVYTNGDNKTKPYRVE--CSYM 318
           +      + ++NGD   +++ Q+L  D   N  N  +  RVE   SYM
Sbjct: 199 EKVAKAKELIRNGDMFQVVLSQRLTADFTDNPFNYYRKLRVENPSSYM 246
>sp|Q11068|MGAT1_CAEEL Putative alpha-1,3-mannosyl-glycoprotein
           2-beta-N-acetylglucosaminyltransferase
           (N-glycosyl-oligosaccharide-glycoprotein
           N-acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I)
          Length = 449

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 37  NDTKETFSSFDV------NFNKKTNIKSLKFAVMERLSPSEDIKALSYN-GRTYEGFEDL 195
           ND    F   D+      NF KKTN++ +K AV   +         S N G++     D 
Sbjct: 327 NDKYINFGKIDLDYLLPANFAKKTNLEVMKEAVELSIDNVASFVLSSENKGKSVRVMYDG 386

Query: 196 PIDYMKNGDTLSLLIDQKLKV 258
            IDY++  D L ++ D K  V
Sbjct: 387 NIDYIRKADKLHIMHDFKAGV 407
>sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC protein)
          Length = 2842

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
 Frame = +1

Query: 4    RIRHEEIVRVNNDTKETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSY---NGRT 174
            R+R     +VN +T+ETFS  D   +KK ++K+    + ++L  +ED     +   +   
Sbjct: 1786 RVRKNTDSKVNVNTEETFS--DNKDSKKQSLKNNPKDLNDKLPDNEDRVRGGFTFDSPHH 1843

Query: 175  YEGFEDLPIDYMKNGDTLSLLID------QKLKVDVYTNGDNKTKPYRVECSYMDTSEEL 336
            Y   E  P  + +N    SL  D       + K ++    ++K    +V C    +S + 
Sbjct: 1844 YAPIEGTPYCFSRNDSLSSLDFDDDDVDLSREKAELRKGKESKDSEAKVTCHTEPSSSQQ 1903

Query: 337  SDR 345
            S R
Sbjct: 1904 SAR 1906
>sp|Q9PA89|RS7_XYLFA 30S ribosomal protein S7
          Length = 155

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
 Frame = +1

Query: 46  KETFSSFDVNFNKKTNIKSLKFAVMERLSPSEDIKALSYNGRTYEGFEDLPIDY---MKN 216
           K  + + +V   K +N   L    ++ +SP+ ++K+    G TY+    +P++     + 
Sbjct: 41  KIVYGAMNVIGEKNSNAIELLQKALDNVSPAVEVKSRRVGGATYQ----VPVEVRASRRM 96

Query: 217 GDTLSLLIDQKLKVDVYTNGDNKTKPYRVECSYMDTSEELSDRVKDR 357
              +  LID   K      G+N + P+++    +D SE     +K R
Sbjct: 97  ALAMRWLIDSSRK-----RGEN-SMPHKLAAELLDASESRGGAIKKR 137
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,767,431
Number of Sequences: 369166
Number of extensions: 1073294
Number of successful extensions: 2837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2833
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)