Planaria EST Database


DrC_02214

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02214
         (520 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FLH0|NMCP_ARATH  Putative nuclear matrix constituent pr...    32   0.69 
sp|P12753|RAD50_YEAST  DNA repair protein RAD50 (153 kDa pro...    32   0.91 
sp|P59399|HISX_LACPL  Histidinol dehydrogenase (HDH)               31   2.0  
sp|P47479|Y237_MYCGE  Hypothetical protein MG237                   30   2.6  
sp|Q03432|PURU_HAEIN  Formyltetrahydrofolate deformylase (Fo...    30   3.4  
sp|P39759|YKQA_BACSU  Hypothetical UPF0131 protein ykqA            30   3.4  
sp|O57524|APA12_ONCMY  Apolipoprotein A-I-2 precursor (Apo-A...    30   3.4  
sp|Q926A7|YC55_LISIN  Hypothetical protein Lin1255/Lin1742         30   4.5  
sp|P04460|MYH6_RABIT  Myosin heavy chain, cardiac muscle alp...    30   4.5  
sp|P37051|PURU_ECOLI  Formyltetrahydrofolate deformylase (Fo...    29   5.9  
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
           (NMCP1-like)
          Length = 1042

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 27/97 (27%), Positives = 47/97 (48%)
 Frame = +2

Query: 38  ENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNEMSELKLVSDSKA 217
           EN+S + ++   +   L  E  +++ ++  K   + H  VE KRL  E  E+KL  + + 
Sbjct: 667 ENSSRDREKAFEQEKKLEEERIQSLKEMAEKE--LEHVQVELKRLDAERLEIKLDRERR- 723

Query: 218 DSSNVIANMEDTGNEYLAIFEKIEGVSHLLKPERSVI 328
                 A ++D+  E     EK+E   H+L+ ER  I
Sbjct: 724 --EREWAELKDSVEELKVQREKLETQRHMLRAERDEI 758
>sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa protein)
          Length = 1312

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
 Frame = +2

Query: 110 IGQLETKMHLINHDLVEQKRLLNEMSELK-LVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
           I QL+TK+   N ++ E +  LNE++E    +  S  D   +++ +E+  N  L+I +++
Sbjct: 226 IHQLQTKIDQYNEEVSEIESQLNEITEKSDKLFKSNQDFQKILSKVENLKNTKLSISDQV 285

Query: 287 EGVSH------LLKPERSVI---FLSDLQELNSQNYSIQSSV 385
           + +S+      L KP+   +   F   L + N+Q   +++ +
Sbjct: 286 KRLSNSIDILDLSKPDLQNLLANFSKVLMDKNNQLRDLETDI 327
>sp|P59399|HISX_LACPL Histidinol dehydrogenase (HDH)
          Length = 428

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +2

Query: 131 MHLINHDLVEQKRLLN----EMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
           M +IN DL   KRL+     ++++LK+ S  +   +NVI N +    +Y   F+K+
Sbjct: 1   MKIINEDLASLKRLVQTKTQQLTDLKVESAVREIIANVIKNGDAAVKDYETQFDKV 56
>sp|P47479|Y237_MYCGE Hypothetical protein MG237
          Length = 294

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 110 IGQLETKMHLINHDLVEQK-RLLNEMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
           +G  ++ + LINHDL+EQK + L  MS  K+V    +D  N +  +      YL   E  
Sbjct: 81  VGFFQSLLQLINHDLIEQKNQQLANMSCEKIVEMVLSDYPNKLNLI-----HYLLAKEAS 135

Query: 287 EGVSHLLKPERSVIFLSDLQELNSQNYS 370
               +LL  +R    L+DL+ L  + +S
Sbjct: 136 FVNPNLL--QRMTFVLTDLELLELKRFS 161
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase)
          Length = 278

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 395 KSILQMIEYYNSDYSVLVNHLRK*HYVRVLINAKHLQFFRRLLNIHYRYLP 243
           K + + I+ Y  DY VL        Y+RVL      ++  R++NIH+ +LP
Sbjct: 148 KLLAEKIDEYTPDYIVLAK------YMRVLNPEFVARYPNRVINIHHSFLP 192
>sp|P39759|YKQA_BACSU Hypothetical UPF0131 protein ykqA
          Length = 277

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 128 KMHLINHDLVEQKRLLNEMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKIEGVSHLL 307
           + H  NH L+ Q   +NE +  K    +  +   V+ N ED G  Y  ++E  E   H L
Sbjct: 12  RKHEKNHHLLAQSACINEQARTKGSLFAAKEGPTVVFNDEDEGYIYGEVYEADELCIHKL 71
>sp|O57524|APA12_ONCMY Apolipoprotein A-I-2 precursor (Apo-AI-2) (ApoA-I-2)
          Length = 262

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 23/95 (24%), Positives = 43/95 (45%)
 Frame = +2

Query: 2   ISKNISFLSQWTENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNE 181
           + K++  L    E   +ELK V+           K I +   ++  +  D+VEQ+R   E
Sbjct: 106 VMKDVEELRSQLEPKRAELKEVL----------DKHIDEYRKRLEPLIKDIVEQRRTELE 155

Query: 182 MSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
              +K+    +   + V AN+E+T  + + I E +
Sbjct: 156 AFRVKIEPVVEEMRAKVSANVEETKAKLMPIVETV 190
>sp|Q926A7|YC55_LISIN Hypothetical protein Lin1255/Lin1742
          Length = 226

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/56 (37%), Positives = 32/56 (57%)
 Frame = +2

Query: 2   ISKNISFLSQWTENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKR 169
           ISKN    S+WTE+    LK  +YEN +   +A + +G+  TK  +IN  +  +KR
Sbjct: 45  ISKN----SEWTEDEDIYLKYFVYENDDDISKAAEFLGR--TKDAVINRLVKLRKR 94
>sp|P04460|MYH6_RABIT Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha)
           (Alpha isomyosin)
          Length = 465

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +2

Query: 38  ENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNEM-SELKLVSDSK 214
           E T+S L+R   ++ +   E G+ I  L+     +  +  E K  L+++ S ++ +  +K
Sbjct: 383 EATASALRR---KHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAK 439

Query: 215 ADSSNVIANMEDTGNEYLAIFEKIE 289
           A+   V   +ED  NEY    E+ +
Sbjct: 440 ANLEKVSRTLEDQANEYRRKLEEAQ 464
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase)
          Length = 280

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 377 IEYYNSDYSVLVNHLRK*HYVRVLINAKHLQFFRRLLNIHYRYLP 243
           I+ Y  DY VL        Y+RVL      +F  +++NIH+ +LP
Sbjct: 156 IDAYQPDYVVLAK------YMRVLTPEFVARFPNKIINIHHSFLP 194
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,666,547
Number of Sequences: 369166
Number of extensions: 773242
Number of successful extensions: 2185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)