Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J17
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent pr... 32 0.69
sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa pro... 32 0.91
sp|P59399|HISX_LACPL Histidinol dehydrogenase (HDH) 31 2.0
sp|P47479|Y237_MYCGE Hypothetical protein MG237 30 2.6
sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase (Fo... 30 3.4
sp|P39759|YKQA_BACSU Hypothetical UPF0131 protein ykqA 30 3.4
sp|O57524|APA12_ONCMY Apolipoprotein A-I-2 precursor (Apo-A... 30 3.4
sp|Q926A7|YC55_LISIN Hypothetical protein Lin1255/Lin1742 30 4.5
sp|P04460|MYH6_RABIT Myosin heavy chain, cardiac muscle alp... 30 4.5
sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase (Fo... 29 5.9
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
(NMCP1-like)
Length = 1042
Score = 32.3 bits (72), Expect = 0.69
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +2
Query: 38 ENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNEMSELKLVSDSKA 217
EN+S + ++ + L E +++ ++ K + H VE KRL E E+KL + +
Sbjct: 667 ENSSRDREKAFEQEKKLEEERIQSLKEMAEKE--LEHVQVELKRLDAERLEIKLDRERR- 723
Query: 218 DSSNVIANMEDTGNEYLAIFEKIEGVSHLLKPERSVI 328
A ++D+ E EK+E H+L+ ER I
Sbjct: 724 --EREWAELKDSVEELKVQREKLETQRHMLRAERDEI 758
>sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 32.0 bits (71), Expect = 0.91
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Frame = +2
Query: 110 IGQLETKMHLINHDLVEQKRLLNEMSELK-LVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
I QL+TK+ N ++ E + LNE++E + S D +++ +E+ N L+I +++
Sbjct: 226 IHQLQTKIDQYNEEVSEIESQLNEITEKSDKLFKSNQDFQKILSKVENLKNTKLSISDQV 285
Query: 287 EGVSH------LLKPERSVI---FLSDLQELNSQNYSIQSSV 385
+ +S+ L KP+ + F L + N+Q +++ +
Sbjct: 286 KRLSNSIDILDLSKPDLQNLLANFSKVLMDKNNQLRDLETDI 327
>sp|P59399|HISX_LACPL Histidinol dehydrogenase (HDH)
Length = 428
Score = 30.8 bits (68), Expect = 2.0
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 131 MHLINHDLVEQKRLLN----EMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
M +IN DL KRL+ ++++LK+ S + +NVI N + +Y F+K+
Sbjct: 1 MKIINEDLASLKRLVQTKTQQLTDLKVESAVREIIANVIKNGDAAVKDYETQFDKV 56
>sp|P47479|Y237_MYCGE Hypothetical protein MG237
Length = 294
Score = 30.4 bits (67), Expect = 2.6
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 110 IGQLETKMHLINHDLVEQK-RLLNEMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
+G ++ + LINHDL+EQK + L MS K+V +D N + + YL E
Sbjct: 81 VGFFQSLLQLINHDLIEQKNQQLANMSCEKIVEMVLSDYPNKLNLI-----HYLLAKEAS 135
Query: 287 EGVSHLLKPERSVIFLSDLQELNSQNYS 370
+LL +R L+DL+ L + +S
Sbjct: 136 FVNPNLL--QRMTFVLTDLELLELKRFS 161
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase)
Length = 278
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 395 KSILQMIEYYNSDYSVLVNHLRK*HYVRVLINAKHLQFFRRLLNIHYRYLP 243
K + + I+ Y DY VL Y+RVL ++ R++NIH+ +LP
Sbjct: 148 KLLAEKIDEYTPDYIVLAK------YMRVLNPEFVARYPNRVINIHHSFLP 192
>sp|P39759|YKQA_BACSU Hypothetical UPF0131 protein ykqA
Length = 277
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 128 KMHLINHDLVEQKRLLNEMSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKIEGVSHLL 307
+ H NH L+ Q +NE + K + + V+ N ED G Y ++E E H L
Sbjct: 12 RKHEKNHHLLAQSACINEQARTKGSLFAAKEGPTVVFNDEDEGYIYGEVYEADELCIHKL 71
>sp|O57524|APA12_ONCMY Apolipoprotein A-I-2 precursor (Apo-AI-2) (ApoA-I-2)
Length = 262
Score = 30.0 bits (66), Expect = 3.4
Identities = 23/95 (24%), Positives = 43/95 (45%)
Frame = +2
Query: 2 ISKNISFLSQWTENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNE 181
+ K++ L E +ELK V+ K I + ++ + D+VEQ+R E
Sbjct: 106 VMKDVEELRSQLEPKRAELKEVL----------DKHIDEYRKRLEPLIKDIVEQRRTELE 155
Query: 182 MSELKLVSDSKADSSNVIANMEDTGNEYLAIFEKI 286
+K+ + + V AN+E+T + + I E +
Sbjct: 156 AFRVKIEPVVEEMRAKVSANVEETKAKLMPIVETV 190
>sp|Q926A7|YC55_LISIN Hypothetical protein Lin1255/Lin1742
Length = 226
Score = 29.6 bits (65), Expect = 4.5
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +2
Query: 2 ISKNISFLSQWTENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKR 169
ISKN S+WTE+ LK +YEN + +A + +G+ TK +IN + +KR
Sbjct: 45 ISKN----SEWTEDEDIYLKYFVYENDDDISKAAEFLGR--TKDAVINRLVKLRKR 94
>sp|P04460|MYH6_RABIT Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha)
(Alpha isomyosin)
Length = 465
Score = 29.6 bits (65), Expect = 4.5
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 38 ENTSSELKRVIYENCNLFVEAGKAIGQLETKMHLINHDLVEQKRLLNEM-SELKLVSDSK 214
E T+S L+R ++ + E G+ I L+ + + E K L+++ S ++ + +K
Sbjct: 383 EATASALRR---KHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAK 439
Query: 215 ADSSNVIANMEDTGNEYLAIFEKIE 289
A+ V +ED NEY E+ +
Sbjct: 440 ANLEKVSRTLEDQANEYRRKLEEAQ 464
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase)
Length = 280
Score = 29.3 bits (64), Expect = 5.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 377 IEYYNSDYSVLVNHLRK*HYVRVLINAKHLQFFRRLLNIHYRYLP 243
I+ Y DY VL Y+RVL +F +++NIH+ +LP
Sbjct: 156 IDAYQPDYVVLAK------YMRVLTPEFVARFPNKIINIHHSFLP 194
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,666,547
Number of Sequences: 369166
Number of extensions: 773242
Number of successful extensions: 2185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)