Planaria EST Database


DrC_02213

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02213
         (795 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    89   1e-17
sp|Q8VI02|PP4R1_RAT  Serine/threonine phosphatase 4 regulato...    30   7.6  
sp|Q8TF05|PP4R1_HUMAN  Serine/threonine phosphatase 4 regula...    30   7.6  
sp|P15894|VG3_SPV1R  Gene 3 protein                                30   7.6  
sp|Q8K2V1|PP4R1_MOUSE  Serine/threonine phosphatase 4 regula...    30   7.6  
sp|P03193|UL52_EBV  Helicase/primase complex protein (Probab...    30   9.9  
sp|Q6BUX9|HSV2_DEBHA  SVP1-like protein 2                          30   9.9  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 51/149 (34%), Positives = 76/149 (51%)
 Frame = +3

Query: 153 MLFAFNRDVGAADAAREIGSVYGKEAMPERTVRRWFSHFKNGNLDLKDGSHTGRSIGFHE 332
           +L+ F     A +A R I    G+ A+   T + WF  FKNG+  L++   +GR +  +E
Sbjct: 15  LLYEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKFKNGDFSLEEIERSGRPVELNE 74

Query: 333 ERLNQLLCENPRQTTRELLRQMDCNQKMVVNHLHSMGKVHKLGIWVPRCLSKKNRNQCIT 512
           E L +L+ E PR + RE+  +++C    +  HL  +G   KLGIWVP  LS   +   + 
Sbjct: 75  EDLVKLVEEEPRLSLREMEEKLECCHSTIACHLGRLGFTSKLGIWVPHELSASQKLTRVN 134

Query: 513 IAAGLLARHRSTQSHKERTLYRIVTGDEK 599
           +   LL   R     K   L  +VTGDEK
Sbjct: 135 VCTQLLTFRR-----KFDWLNNLVTGDEK 158
>sp|Q8VI02|PP4R1_RAT Serine/threonine phosphatase 4 regulatory subunit 1
          Length = 951

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
           C C +FH++  C   +    SV+   +QA  + L    F+  CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|Q8TF05|PP4R1_HUMAN Serine/threonine phosphatase 4 regulatory subunit 1
          Length = 950

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
           C C +FH++  C   +    SV+   +QA  + L    F+  CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|P15894|VG3_SPV1R Gene 3 protein
          Length = 322

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 27/78 (34%), Positives = 34/78 (43%)
 Frame = +3

Query: 423 NHLHSMGKVHKLGIWVPRCLSKKNRNQCITIAAGLLARHRSTQSHKERTLYRIVTGDEKW 602
           +HL  M KV    + + +   KKN  Q I+  A  L RHRST     R + R  T DE  
Sbjct: 3   SHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTIL---REIKRFKTIDE-- 57

Query: 603 YMYITMKRRKKWLSPDKK 656
             Y   K  K +    KK
Sbjct: 58  --YSAYKSDKMYYEKRKK 73
>sp|Q8K2V1|PP4R1_MOUSE Serine/threonine phosphatase 4 regulatory subunit 1
          Length = 951

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
           C C +FH++  C   +    SV+   +QA  + L    F+  CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|P03193|UL52_EBV Helicase/primase complex protein (Probable DNA replication protein
           BSLF1)
          Length = 874

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 117 CQVDKIEHFRHNMLFAFNRDVGAADAAREIGSVYGKEAMPERTVRRWFSHFKNGNL--DL 290
           C ++ + H          + + A  +  E+G V+G  A  E+T    F+HF +  L  D 
Sbjct: 183 CTIETLAHLTELFTSESGQSLAAVTSLAELGEVFGSSAWAEQT--EAFAHFAHEKLRRDS 240

Query: 291 KDGSHTGRSIGFHEERL 341
           ++     R+I  +  RL
Sbjct: 241 REIRAVARTIDAYRGRL 257
>sp|Q6BUX9|HSV2_DEBHA SVP1-like protein 2
          Length = 432

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 786 LLNVEL-RINCLVVLKQFVMDYAFAVPPNTT*SFENID 676
           +LNV L RI  +VVLK  V+ Y F+ PP    ++E I+
Sbjct: 111 VLNVLLSRIRIIVVLKNQVLVYGFSSPPKKFATYETIE 148
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,089,657
Number of Sequences: 369166
Number of extensions: 2027186
Number of successful extensions: 4846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4842
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)