Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J09
(795 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 89 1e-17
sp|Q8VI02|PP4R1_RAT Serine/threonine phosphatase 4 regulato... 30 7.6
sp|Q8TF05|PP4R1_HUMAN Serine/threonine phosphatase 4 regula... 30 7.6
sp|P15894|VG3_SPV1R Gene 3 protein 30 7.6
sp|Q8K2V1|PP4R1_MOUSE Serine/threonine phosphatase 4 regula... 30 7.6
sp|P03193|UL52_EBV Helicase/primase complex protein (Probab... 30 9.9
sp|Q6BUX9|HSV2_DEBHA SVP1-like protein 2 30 9.9
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 89.0 bits (219), Expect = 1e-17
Identities = 51/149 (34%), Positives = 76/149 (51%)
Frame = +3
Query: 153 MLFAFNRDVGAADAAREIGSVYGKEAMPERTVRRWFSHFKNGNLDLKDGSHTGRSIGFHE 332
+L+ F A +A R I G+ A+ T + WF FKNG+ L++ +GR + +E
Sbjct: 15 LLYEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKFKNGDFSLEEIERSGRPVELNE 74
Query: 333 ERLNQLLCENPRQTTRELLRQMDCNQKMVVNHLHSMGKVHKLGIWVPRCLSKKNRNQCIT 512
E L +L+ E PR + RE+ +++C + HL +G KLGIWVP LS + +
Sbjct: 75 EDLVKLVEEEPRLSLREMEEKLECCHSTIACHLGRLGFTSKLGIWVPHELSASQKLTRVN 134
Query: 513 IAAGLLARHRSTQSHKERTLYRIVTGDEK 599
+ LL R K L +VTGDEK
Sbjct: 135 VCTQLLTFRR-----KFDWLNNLVTGDEK 158
>sp|Q8VI02|PP4R1_RAT Serine/threonine phosphatase 4 regulatory subunit 1
Length = 951
Score = 30.0 bits (66), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
C C +FH++ C + SV+ +QA + L F+ CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|Q8TF05|PP4R1_HUMAN Serine/threonine phosphatase 4 regulatory subunit 1
Length = 950
Score = 30.0 bits (66), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
C C +FH++ C + SV+ +QA + L F+ CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|P15894|VG3_SPV1R Gene 3 protein
Length = 322
Score = 30.0 bits (66), Expect = 7.6
Identities = 27/78 (34%), Positives = 34/78 (43%)
Frame = +3
Query: 423 NHLHSMGKVHKLGIWVPRCLSKKNRNQCITIAAGLLARHRSTQSHKERTLYRIVTGDEKW 602
+HL M KV + + + KKN Q I+ A L RHRST R + R T DE
Sbjct: 3 SHLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTIL---REIKRFKTIDE-- 57
Query: 603 YMYITMKRRKKWLSPDKK 656
Y K K + KK
Sbjct: 58 --YSAYKSDKMYYEKRKK 73
>sp|Q8K2V1|PP4R1_MOUSE Serine/threonine phosphatase 4 regulatory subunit 1
Length = 951
Score = 30.0 bits (66), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 612 CTCTIFHLQ*RCGKEYAPCDSVLSDVEQANPQQL*CTDFYSFCSDNV 472
C C +FH++ C + SV+ +QA + L F+ CSDNV
Sbjct: 222 CDCRMFHVRKVCAANFGDICSVVG--QQATEEML-LPRFFQLCSDNV 265
>sp|P03193|UL52_EBV Helicase/primase complex protein (Probable DNA replication protein
BSLF1)
Length = 874
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 117 CQVDKIEHFRHNMLFAFNRDVGAADAAREIGSVYGKEAMPERTVRRWFSHFKNGNL--DL 290
C ++ + H + + A + E+G V+G A E+T F+HF + L D
Sbjct: 183 CTIETLAHLTELFTSESGQSLAAVTSLAELGEVFGSSAWAEQT--EAFAHFAHEKLRRDS 240
Query: 291 KDGSHTGRSIGFHEERL 341
++ R+I + RL
Sbjct: 241 REIRAVARTIDAYRGRL 257
>sp|Q6BUX9|HSV2_DEBHA SVP1-like protein 2
Length = 432
Score = 29.6 bits (65), Expect = 9.9
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 786 LLNVEL-RINCLVVLKQFVMDYAFAVPPNTT*SFENID 676
+LNV L RI +VVLK V+ Y F+ PP ++E I+
Sbjct: 111 VLNVLLSRIRIIVVLKNQVLVYGFSSPPKKFATYETIE 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,089,657
Number of Sequences: 369166
Number of extensions: 2027186
Number of successful extensions: 4846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4842
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)