Planaria EST Database


DrC_02208

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02208
         (599 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24746|NEUR_DROVI  Neuralized protein                           64   2e-10
sp|P29503|NEUR_DROME  Neuralized protein                           64   2e-10
sp|O76050|NEUL1_HUMAN  Neuralized-like protein 1 (h-neuraliz...    55   1e-07
sp|Q923S6|NEURL_MOUSE  Neuralized-like protein 1 (m-neuraliz...    55   1e-07
sp|Q6UWE0|LRSM1_HUMAN  Ubiquitin ligase protein LRSAM1 (Leuc...    45   1e-04
sp|Q80ZI6|LRSM1_MOUSE  Ubiquitin ligase protein LRSAM1 (Leuc...    44   3e-04
sp|O10296|IAP1_NPVOP  Apoptosis inhibitor 1 (IAP-1)                44   3e-04
sp|P41435|IAP1_NPVAC  Apoptosis inhibitor 1 (IAP-1)                44   4e-04
sp|Q09463|RNF5_CAEEL  RING finger protein 5                        43   7e-04
sp|Q99675|CGRF1_HUMAN  Cell growth regulator with RING finge...    42   0.001
>sp|Q24746|NEUR_DROVI Neuralized protein
          Length = 747

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 42/65 (64%)
 Frame = +1

Query: 265 RNNSDALNSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEII 444
           + ++D+   C IC     DS++Y CGH+C+CY C+I+      GG   CP+CRA ++++I
Sbjct: 685 QQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGG--QCPLCRAVIRDVI 742

Query: 445 RVFTS 459
           R +T+
Sbjct: 743 RTYTT 747
>sp|P29503|NEUR_DROME Neuralized protein
          Length = 754

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 25/65 (38%), Positives = 42/65 (64%)
 Frame = +1

Query: 265 RNNSDALNSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEII 444
           + ++D+   C IC     DS++Y CGH+C+CY C+I+      GG   CP+CRA ++++I
Sbjct: 692 QQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRGVGGG--QCPLCRAVIRDVI 749

Query: 445 RVFTS 459
           R +T+
Sbjct: 750 RTYTT 754
>sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 (h-neuralized 1) (h-neu) (RING finger
           protein 67)
          Length = 574

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +1

Query: 286 NSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEIIRVFTS 459
           + C IC     D+++Y CGH+CLCY C ++ +   +     CP+CR  +++II+ + S
Sbjct: 519 DECTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHA---CCPICRRPIKDIIKTYRS 573
>sp|Q923S6|NEURL_MOUSE Neuralized-like protein 1 (m-neuralized 1) (m-neu1)
          Length = 574

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +1

Query: 286 NSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEIIRVFTS 459
           + C IC     D+++Y CGH+CLCY C ++ +   +     CP+CR  +++II+ + S
Sbjct: 519 DECTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHA---CCPICRRPIKDIIKTYRS 573
>sp|Q6UWE0|LRSM1_HUMAN Ubiquitin ligase protein LRSAM1 (Leucine-rich repeat and sterile
           alpha motif containing 1) (Tsg101-associated ligase)
           (hTAL)
          Length = 723

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 286 NSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEIIRVFTS 459
           + CV+C+   +  +   CGH+C C  C    R        +CP+CR D+ + +R++ S
Sbjct: 673 SECVVCLEREAQMIFLNCGHVCCCQQCCQPLR--------TCPLCRQDIAQRLRIYHS 722
>sp|Q80ZI6|LRSM1_MOUSE Ubiquitin ligase protein LRSAM1 (Leucine-rich repeat and sterile
           alpha motif containing 1) (Tsg101-associated ligase)
          Length = 727

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 286 NSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEIIRVFTS 459
           + CV+C+   +  +   CGH+C C  C    R        +CP+CR ++ + +R++ S
Sbjct: 677 SECVVCLEREAQMVFLTCGHVCCCQQCCQPLR--------TCPLCRQEISQRLRIYHS 726
>sp|O10296|IAP1_NPVOP Apoptosis inhibitor 1 (IAP-1)
          Length = 275

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +1

Query: 274 SDALNSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQEIIRVF 453
           S+AL  C +C+    D+++  C H C+C  C   F L+       CP CR DV + I++F
Sbjct: 222 SEALE-CKVCLERQRDAVLLPCRHFCVCMQC--YFALDG-----KCPTCRQDVADFIKIF 273

Query: 454 TS 459
            +
Sbjct: 274 VT 275
>sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 (IAP-1)
          Length = 286

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 259 DIRNNSDALNS---CVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRAD 429
           ++  N+D +     C +C+    D+++  C H C+C  C         G    CP CR D
Sbjct: 224 NLNENADDIEEKYECKVCLERQRDAVLMPCRHFCVCVQCYF-------GLDQKCPTCRQD 276

Query: 430 VQEIIRVF 453
           V + I++F
Sbjct: 277 VTDFIKIF 284
>sp|Q09463|RNF5_CAEEL RING finger protein 5
          Length = 235

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +1

Query: 244 SSSTKDIRNNSDALNSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCR 423
           SSS KD      A   C IC++   D+++  CGHL  C+PC  Q+ L++      CPVC+
Sbjct: 14  SSSNKD----ESARFECNICLDAAKDAVVSLCGHL-FCWPCLSQW-LDTRPNNQVCPVCK 67

Query: 424 ADV 432
           + +
Sbjct: 68  SAI 70
>sp|Q99675|CGRF1_HUMAN Cell growth regulator with RING finger domain 1 (Cell growth
           regulatory gene 19 protein)
          Length = 332

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 31/121 (25%), Positives = 49/121 (40%)
 Frame = +1

Query: 76  EFNRQRSMNISANIEHANMLHSMRNEISEMKSMIRIMLQSQIETHRFLRQEMAAVFSSST 255
           +F+  + + +SAN    N      N  SE K+  R +L+                   S 
Sbjct: 221 QFHDLKQLFMSAN----NNFTPSNNSSSEEKNTDRSLLEK---------------VGLSE 261

Query: 256 KDIRNNSDALNSCVICMNCTSDSMMYRCGHLCLCYPCSIQFRLNSNGGAMSCPVCRADVQ 435
            ++  + +    CV+C N T + ++  C H CLC  C   F+         CP+CR  VQ
Sbjct: 262 SEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ--------QCPMCRQFVQ 313

Query: 436 E 438
           E
Sbjct: 314 E 314
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,803,743
Number of Sequences: 369166
Number of extensions: 1111482
Number of successful extensions: 3273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)