Planaria EST Database


DrC_02203

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02203
         (481 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40037|HMF1_YEAST  HMF1 protein (High dosage growth inhib...    30   3.7  
sp|P21908|GLK_ZYMMO  Glucokinase (Glucose kinase)                  30   3.7  
sp|P40185|MMF1_YEAST  MMF1 protein, mitochondrial precursor ...    29   6.4  
sp|P18748|ZO29_XENLA  Oocyte zinc finger protein XLCOF29           29   6.4  
sp|P70388|RAD50_MOUSE  DNA repair protein RAD50 (mRad50)           28   8.3  
sp|O13731|UBR11_SCHPO  Ubiquitin-protein ligase E3 component...    28   8.3  
>sp|P40037|HMF1_YEAST HMF1 protein (High dosage growth inhibitor)
          Length = 129

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
 Frame = +3

Query: 6   NIKQELE--NADLDRELRCK-------ETGEFNNVISNHNDENKKGRSCSPVASL 143
           NIK  LE  N+ LDR ++            EFN+V + + + +K  RSC  VA+L
Sbjct: 59  NIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAAL 113
>sp|P21908|GLK_ZYMMO Glucokinase (Glucose kinase)
          Length = 324

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 294 PINFNTDIDCDVKNIVNDIGQEQRAEEQVESNNVPEICSQDD 419
           P   N  +D D   ++ND G    A   ++S+ +  IC  D+
Sbjct: 85  PATLNEKLDIDTHVLINDFGAVAHAVAHMDSSYLDHICGPDE 126
>sp|P40185|MMF1_YEAST MMF1 protein, mitochondrial precursor (Maintenance of mitochondrial
           function 1) (Isoleucine biosynthesis and maintenance of
           intact mitochondria 1)
          Length = 145

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 57  KETGEFNNVISNHNDENKKGRSCSPVASL 143
           K   EFN+V + H   +K  RSC  VASL
Sbjct: 101 KNFAEFNSVYAKHFHTHKPARSCVGVASL 129
>sp|P18748|ZO29_XENLA Oocyte zinc finger protein XLCOF29
          Length = 537

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 162 HRNLHLPMKQLDCNFCLFCFRHC 94
           HR LHL +K   C  C  CF +C
Sbjct: 421 HRRLHLTLKAFPCAECGKCFTNC 443
>sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50)
          Length = 1312

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   GNIKQELENADLDRELRCKETGEFNNVISNHNDENKKGRSCSPV 134
           G +K+E+E +   R +    T  ++  I+   DEN   +SC PV
Sbjct: 643 GRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN---QSCCPV 683
>sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component N-recognin-11
           (N-end-recognizing protein 11)
          Length = 2052

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 204 PAVHEDDHHSIKREENLAPRIPSPSMDATEPINFNTDIDCDVKNIVNDIGQEQRAEEQV 380
           P  H  +H   +   +++    S   D  +P  +N D++C + N+ +D  +EQ+  E+V
Sbjct: 125 PCFHATNHEGHETHVSISTSY-SGICDCGDPEAWNVDLNCKIHNVPDD--EEQKKPEEV 180
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,734,429
Number of Sequences: 369166
Number of extensions: 881953
Number of successful extensions: 2996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)