Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H18
(481 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40037|HMF1_YEAST HMF1 protein (High dosage growth inhib... 30 3.7
sp|P21908|GLK_ZYMMO Glucokinase (Glucose kinase) 30 3.7
sp|P40185|MMF1_YEAST MMF1 protein, mitochondrial precursor ... 29 6.4
sp|P18748|ZO29_XENLA Oocyte zinc finger protein XLCOF29 29 6.4
sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50) 28 8.3
sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component... 28 8.3
>sp|P40037|HMF1_YEAST HMF1 protein (High dosage growth inhibitor)
Length = 129
Score = 29.6 bits (65), Expect = 3.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Frame = +3
Query: 6 NIKQELE--NADLDRELRCK-------ETGEFNNVISNHNDENKKGRSCSPVASL 143
NIK LE N+ LDR ++ EFN+V + + + +K RSC VA+L
Sbjct: 59 NIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAAL 113
>sp|P21908|GLK_ZYMMO Glucokinase (Glucose kinase)
Length = 324
Score = 29.6 bits (65), Expect = 3.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 294 PINFNTDIDCDVKNIVNDIGQEQRAEEQVESNNVPEICSQDD 419
P N +D D ++ND G A ++S+ + IC D+
Sbjct: 85 PATLNEKLDIDTHVLINDFGAVAHAVAHMDSSYLDHICGPDE 126
>sp|P40185|MMF1_YEAST MMF1 protein, mitochondrial precursor (Maintenance of mitochondrial
function 1) (Isoleucine biosynthesis and maintenance of
intact mitochondria 1)
Length = 145
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 57 KETGEFNNVISNHNDENKKGRSCSPVASL 143
K EFN+V + H +K RSC VASL
Sbjct: 101 KNFAEFNSVYAKHFHTHKPARSCVGVASL 129
>sp|P18748|ZO29_XENLA Oocyte zinc finger protein XLCOF29
Length = 537
Score = 28.9 bits (63), Expect = 6.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 162 HRNLHLPMKQLDCNFCLFCFRHC 94
HR LHL +K C C CF +C
Sbjct: 421 HRRLHLTLKAFPCAECGKCFTNC 443
>sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50)
Length = 1312
Score = 28.5 bits (62), Expect = 8.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 3 GNIKQELENADLDRELRCKETGEFNNVISNHNDENKKGRSCSPV 134
G +K+E+E + R + T ++ I+ DEN +SC PV
Sbjct: 643 GRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN---QSCCPV 683
>sp|O13731|UBR11_SCHPO Ubiquitin-protein ligase E3 component N-recognin-11
(N-end-recognizing protein 11)
Length = 2052
Score = 28.5 bits (62), Expect = 8.3
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 204 PAVHEDDHHSIKREENLAPRIPSPSMDATEPINFNTDIDCDVKNIVNDIGQEQRAEEQV 380
P H +H + +++ S D +P +N D++C + N+ +D +EQ+ E+V
Sbjct: 125 PCFHATNHEGHETHVSISTSY-SGICDCGDPEAWNVDLNCKIHNVPDD--EEQKKPEEV 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,734,429
Number of Sequences: 369166
Number of extensions: 881953
Number of successful extensions: 2996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)