Planaria EST Database


DrC_02202

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02202
         (416 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2H3|IFT80_HUMAN  Intraflagellar transport 80 homolog (...   110   1e-24
sp|Q8K057|IFT80_MOUSE  Intraflagellar transport 80 homolog (...   108   6e-24
sp|Q66HB3|IFT80_RAT  Intraflagellar transport 80 homolog (WD...   107   7e-24
sp|Q8BND3|WDR35_MOUSE  WD-repeat protein 35                        34   0.10 
sp|P62191|PRS4_HUMAN  26S protease regulatory subunit 4 (P26...    32   0.40 
sp|P04177|TY3H_RAT  Tyrosine 3-monooxygenase (Tyrosine 3-hyd...    31   1.2  
sp|Q9P2L0|WDR35_HUMAN  WD-repeat protein 35                        30   1.5  
sp|Q90732|PRS4_CHICK  26S protease regulatory subunit 4 (P26...    30   2.0  
sp|O57285|PHOSP_SENDO  Phosphoprotein (P protein)                  30   2.6  
sp|Q8IWJ2|GCC2_HUMAN  GRIP and coiled-coil domain-containing...    30   2.6  
>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport 80 homolog (WD-repeat protein 56)
          Length = 777

 Score =  110 bits (275), Expect = 1e-24
 Identities = 52/126 (41%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
 Frame = +3

Query: 3    LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
            + ++DKV+YI  IK +P KE + A +LL +GNIQ+AE +L+QAGL+++A  +++ LYNW+
Sbjct: 640  IGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQAIQININLYNWE 699

Query: 183  RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
            RALEL      ++  VLA+R+++L+   + E NK YL Y E    +WE ++ K+  E  +
Sbjct: 700  RALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLHYAEGLQIDWEKIKAKIEMEITK 759

Query: 360  EEKRSN 377
            E ++S+
Sbjct: 760  EREQSS 765
>sp|Q8K057|IFT80_MOUSE Intraflagellar transport 80 homolog (WD-repeat protein 56)
          Length = 777

 Score =  108 bits (269), Expect = 6e-24
 Identities = 51/126 (40%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
 Frame = +3

Query: 3    LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
            + ++DKV YI  IK +P +E + A +L+ +GNIQ+AE +L+QAGL+++A  +++ LYNW+
Sbjct: 640  VGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWE 699

Query: 183  RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
            RALEL      ++  VLA+R+++L    + E NK YL+Y E    +WE ++ K+  E  +
Sbjct: 700  RALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITK 759

Query: 360  EEKRSN 377
            E  RS+
Sbjct: 760  ERDRSS 765
>sp|Q66HB3|IFT80_RAT Intraflagellar transport 80 homolog (WD-repeat protein 56)
          Length = 777

 Score =  107 bits (268), Expect = 7e-24
 Identities = 50/126 (39%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
 Frame = +3

Query: 3    LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
            + ++DKV YI  +K +P +E + A +L+ +GNIQ+AE +L+QAGL+++A  +++ LYNW+
Sbjct: 640  VGEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQAIQININLYNWE 699

Query: 183  RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
            RALEL      ++  VLA+R+++L+   + E NK YL+Y E    +WE ++ K+  E  +
Sbjct: 700  RALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITK 759

Query: 360  EEKRSN 377
            E  RS+
Sbjct: 760  ERDRSS 765
>sp|Q8BND3|WDR35_MOUSE WD-repeat protein 35
          Length = 1181

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 15/64 (23%), Positives = 35/64 (54%)
 Frame = +3

Query: 9   DVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWDRA 188
           D   +++++++  +  + ++QAE++   G  +DAE M         A  + ++L +W R 
Sbjct: 724 DYQGIKFVKLLGNLQSESMKQAEVIAYFGRFEDAERMYQDMDRRDLAIGLRMKLGDWFRV 783

Query: 189 LELV 200
           L+L+
Sbjct: 784 LQLL 787
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
           ATPase 1)
 sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
           ATPase 1)
 sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
           ATPase 1)
          Length = 440

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 22/57 (38%), Positives = 33/57 (57%)
 Frame = +3

Query: 204 DKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKEYEQEEKRS 374
           D    LPLV  H +  L+ + +LE  K+YL  +EE +   E ++ L  E +QEE+RS
Sbjct: 44  DAASKLPLVTPHTQCRLK-LLKLERIKDYLLMEEEFIRNQEQMKPL--EEKQEEERS 97
>sp|P04177|TY3H_RAT Tyrosine 3-monooxygenase (Tyrosine 3-hydroxylase) (TH)
          Length = 498

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 243 RRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKE 350
           R +L+G   LE    Y  Y+E+S+P+ E V + +KE
Sbjct: 250 REHLEGFQLLER---YCGYREDSIPQLEDVSRFLKE 282
>sp|Q9P2L0|WDR35_HUMAN WD-repeat protein 35
          Length = 1181

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 14/64 (21%), Positives = 36/64 (56%)
 Frame = +3

Query: 9   DVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWDRA 188
           D   +++++ + ++  + ++QAE++   G  ++AE   ++      A  + L+L +W R 
Sbjct: 724 DYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEAERTYLEMDRRDLAIGLRLKLGDWFRV 783

Query: 189 LELV 200
           L+L+
Sbjct: 784 LQLL 787
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
           ATPase 1)
          Length = 440

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +3

Query: 222 PLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKEYEQEEKRS 374
           PLV  H +  L+ + +LE  K+YL  +EE +   E ++ L  E +QEE+RS
Sbjct: 50  PLVTPHTQCRLK-LLKLERIKDYLLMEEEFIRNQEQMKPL--EEKQEEERS 97
>sp|O57285|PHOSP_SENDO Phosphoprotein (P protein)
          Length = 568

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 264 SRLENNKNYLKYQEESVPEWESVEKLMKEYEQEE 365
           +R++ NK  LK  +ESV  +  + K   EY++E+
Sbjct: 384 NRVDENKQLLKQIQESVESFRDIYKRFSEYQKEQ 417
>sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2 (Golgi coiled coil
           protein GCC185) (CTCL tumor antigen se1-1)
           (CLL-associated antigen KW-11)
          Length = 1583

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 270 LENNKNYLKYQEESVPEWESVEKLMKEYEQEE 365
           LE  K     QEESV + E ++ L+++YEQE+
Sbjct: 708 LELEKEIKCLQEESVVQCEELKSLLRDYEQEK 739
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,859,508
Number of Sequences: 369166
Number of extensions: 796223
Number of successful extensions: 2416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)