Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_H14
(416 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport 80 homolog (... 110 1e-24
sp|Q8K057|IFT80_MOUSE Intraflagellar transport 80 homolog (... 108 6e-24
sp|Q66HB3|IFT80_RAT Intraflagellar transport 80 homolog (WD... 107 7e-24
sp|Q8BND3|WDR35_MOUSE WD-repeat protein 35 34 0.10
sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 (P26... 32 0.40
sp|P04177|TY3H_RAT Tyrosine 3-monooxygenase (Tyrosine 3-hyd... 31 1.2
sp|Q9P2L0|WDR35_HUMAN WD-repeat protein 35 30 1.5
sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 (P26... 30 2.0
sp|O57285|PHOSP_SENDO Phosphoprotein (P protein) 30 2.6
sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing... 30 2.6
>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport 80 homolog (WD-repeat protein 56)
Length = 777
Score = 110 bits (275), Expect = 1e-24
Identities = 52/126 (41%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
+ ++DKV+YI IK +P KE + A +LL +GNIQ+AE +L+QAGL+++A +++ LYNW+
Sbjct: 640 IGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQAIQININLYNWE 699
Query: 183 RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
RALEL ++ VLA+R+++L+ + E NK YL Y E +WE ++ K+ E +
Sbjct: 700 RALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLHYAEGLQIDWEKIKAKIEMEITK 759
Query: 360 EEKRSN 377
E ++S+
Sbjct: 760 EREQSS 765
>sp|Q8K057|IFT80_MOUSE Intraflagellar transport 80 homolog (WD-repeat protein 56)
Length = 777
Score = 108 bits (269), Expect = 6e-24
Identities = 51/126 (40%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
+ ++DKV YI IK +P +E + A +L+ +GNIQ+AE +L+QAGL+++A +++ LYNW+
Sbjct: 640 VGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWE 699
Query: 183 RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
RALEL ++ VLA+R+++L + E NK YL+Y E +WE ++ K+ E +
Sbjct: 700 RALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITK 759
Query: 360 EEKRSN 377
E RS+
Sbjct: 760 ERDRSS 765
>sp|Q66HB3|IFT80_RAT Intraflagellar transport 80 homolog (WD-repeat protein 56)
Length = 777
Score = 107 bits (268), Expect = 7e-24
Identities = 50/126 (39%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
Frame = +3
Query: 3 LNDVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWD 182
+ ++DKV YI +K +P +E + A +L+ +GNIQ+AE +L+QAGL+++A +++ LYNW+
Sbjct: 640 VGEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQAIQININLYNWE 699
Query: 183 RALELVGDKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVE-KLMKEYEQ 359
RALEL ++ VLA+R+++L+ + E NK YL+Y E +WE ++ K+ E +
Sbjct: 700 RALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITK 759
Query: 360 EEKRSN 377
E RS+
Sbjct: 760 ERDRSS 765
>sp|Q8BND3|WDR35_MOUSE WD-repeat protein 35
Length = 1181
Score = 34.3 bits (77), Expect = 0.10
Identities = 15/64 (23%), Positives = 35/64 (54%)
Frame = +3
Query: 9 DVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWDRA 188
D +++++++ + + ++QAE++ G +DAE M A + ++L +W R
Sbjct: 724 DYQGIKFVKLLGNLQSESMKQAEVIAYFGRFEDAERMYQDMDRRDLAIGLRMKLGDWFRV 783
Query: 189 LELV 200
L+L+
Sbjct: 784 LQLL 787
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
ATPase 1)
sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
ATPase 1)
sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
ATPase 1)
Length = 440
Score = 32.3 bits (72), Expect = 0.40
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 204 DKPKYLPLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKEYEQEEKRS 374
D LPLV H + L+ + +LE K+YL +EE + E ++ L E +QEE+RS
Sbjct: 44 DAASKLPLVTPHTQCRLK-LLKLERIKDYLLMEEEFIRNQEQMKPL--EEKQEEERS 97
>sp|P04177|TY3H_RAT Tyrosine 3-monooxygenase (Tyrosine 3-hydroxylase) (TH)
Length = 498
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 243 RRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKE 350
R +L+G LE Y Y+E+S+P+ E V + +KE
Sbjct: 250 REHLEGFQLLER---YCGYREDSIPQLEDVSRFLKE 282
>sp|Q9P2L0|WDR35_HUMAN WD-repeat protein 35
Length = 1181
Score = 30.4 bits (67), Expect = 1.5
Identities = 14/64 (21%), Positives = 36/64 (56%)
Frame = +3
Query: 9 DVDKVEYIEMIKRIPEKEVRQAEMLLITGNIQDAEGMLVQAGLLFRATMVHLRLYNWDRA 188
D +++++ + ++ + ++QAE++ G ++AE ++ A + L+L +W R
Sbjct: 724 DYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEAERTYLEMDRRDLAIGLRLKLGDWFRV 783
Query: 189 LELV 200
L+L+
Sbjct: 784 LQLL 787
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S subunit
ATPase 1)
Length = 440
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 222 PLVLAHRRRYLQGISRLENNKNYLKYQEESVPEWESVEKLMKEYEQEEKRS 374
PLV H + L+ + +LE K+YL +EE + E ++ L E +QEE+RS
Sbjct: 50 PLVTPHTQCRLK-LLKLERIKDYLLMEEEFIRNQEQMKPL--EEKQEEERS 97
>sp|O57285|PHOSP_SENDO Phosphoprotein (P protein)
Length = 568
Score = 29.6 bits (65), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 264 SRLENNKNYLKYQEESVPEWESVEKLMKEYEQEE 365
+R++ NK LK +ESV + + K EY++E+
Sbjct: 384 NRVDENKQLLKQIQESVESFRDIYKRFSEYQKEQ 417
>sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2 (Golgi coiled coil
protein GCC185) (CTCL tumor antigen se1-1)
(CLL-associated antigen KW-11)
Length = 1583
Score = 29.6 bits (65), Expect = 2.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 270 LENNKNYLKYQEESVPEWESVEKLMKEYEQEE 365
LE K QEESV + E ++ L+++YEQE+
Sbjct: 708 LELEKEIKCLQEESVVQCEELKSLLRDYEQEK 739
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,859,508
Number of Sequences: 369166
Number of extensions: 796223
Number of successful extensions: 2416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2416
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)