Planaria EST Database


DrC_02179

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02179
         (883 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q61084|M3K3_MOUSE  Mitogen-activated protein kinase kinas...   174   4e-43
sp|Q99759|M3K3_HUMAN  Mitogen-activated protein kinase kinas...   174   4e-43
sp|P27636|CDC15_YEAST  Cell division control protein 15           171   2e-42
sp|Q9Y2U5|M3K2_HUMAN  Mitogen-activated protein kinase kinas...   169   7e-42
sp|Q61083|M3K2_MOUSE  Mitogen-activated protein kinase kinas...   166   6e-41
sp|O22040|M3K1_ARATH  Mitogen-activated protein kinase kinas...   163   7e-40
sp|P41892|CDC7_SCHPO  Cell division control protein 7             160   4e-39
sp|Q9FZ36|M3K2_ARATH  Mitogen-activated protein kinase kinas...   160   6e-39
sp|Q9P289|MST4_HUMAN  Serine/threonine-protein kinase MST4 (...   157   3e-38
sp|Q99JT2|MST4_MOUSE  Serine/threonine-protein kinase MST4 (...   157   4e-38
>sp|Q61084|M3K3_MOUSE Mitogen-activated protein kinase kinase kinase 3 (MAPK/ERK kinase
            kinase 3) (MEK kinase 3) (MEKK 3)
          Length = 626

 Score =  174 bits (440), Expect = 4e-43
 Identities = 103/260 (39%), Positives = 155/260 (59%), Gaps = 8/260 (3%)
 Frame = -1

Query: 868  IGRGAFGTVFKTKESQSDREFAVKTLKIMLND---NFNIQALSLERDLNKYREKIQHERI 698
            +G+GAFG V+   +  + RE A K ++   +    +  + AL  E  L K    +QHERI
Sbjct: 368  LGQGAFGRVYLCYDVDTGRELASKQVQFDPDSPETSKEVSALECEIQLLK---NLQHERI 424

Query: 697  VKYFGAIR--TQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQ 524
            V+Y+G +R   +K + IFMEYMPGGS++ Q+       L E   +KYT+QILEG+ +LH 
Sbjct: 425  VQYYGCLRDRAEKILTIFMEYMPGGSVKDQL--KAYGALTESVTRKYTRQILEGMSYLHS 482

Query: 523  SDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKD--KVRNLCGTANYIAPEIINDE 350
            + I+HRDIK  NIL DS GN KL DFG S  ++T+      +R++ GT  +++PE+I+ E
Sbjct: 483  NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGE 542

Query: 349  SYDFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVG-QNRKIEYPSELTNDFKNLLDQ 173
             Y  K D+WS+G T++EMLT  PP+      A IFK+  Q    + PS ++   ++ L +
Sbjct: 543  GYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHGRDFL-R 601

Query: 172  MLTTDPTKRSSADELLKSAF 113
             +  +  +R SA+ELL   F
Sbjct: 602  RIFVEARQRPSAEELLTHHF 621
>sp|Q99759|M3K3_HUMAN Mitogen-activated protein kinase kinase kinase 3 (MAPK/ERK kinase
            kinase 3) (MEK kinase 3) (MEKK 3)
          Length = 626

 Score =  174 bits (440), Expect = 4e-43
 Identities = 103/260 (39%), Positives = 155/260 (59%), Gaps = 8/260 (3%)
 Frame = -1

Query: 868  IGRGAFGTVFKTKESQSDREFAVKTLKIMLND---NFNIQALSLERDLNKYREKIQHERI 698
            +G+GAFG V+   +  + RE A K ++   +    +  + AL  E  L K    +QHERI
Sbjct: 368  LGQGAFGRVYLCYDVDTGRELASKQVQFDPDSPETSKEVSALECEIQLLK---NLQHERI 424

Query: 697  VKYFGAIR--TQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQ 524
            V+Y+G +R   +K + IFMEYMPGGS++ Q+       L E   +KYT+QILEG+ +LH 
Sbjct: 425  VQYYGCLRDRAEKTLTIFMEYMPGGSVKDQL--KAYGALTESVTRKYTRQILEGMSYLHS 482

Query: 523  SDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKD--KVRNLCGTANYIAPEIINDE 350
            + I+HRDIK  NIL DS GN KL DFG S  ++T+      +R++ GT  +++PE+I+ E
Sbjct: 483  NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGMRSVTGTPYWMSPEVISGE 542

Query: 349  SYDFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVG-QNRKIEYPSELTNDFKNLLDQ 173
             Y  K D+WS+G T++EMLT  PP+      A IFK+  Q    + PS ++   ++ L +
Sbjct: 543  GYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHGRDFL-R 601

Query: 172  MLTTDPTKRSSADELLKSAF 113
             +  +  +R SA+ELL   F
Sbjct: 602  RIFVEARQRPSAEELLTHHF 621
>sp|P27636|CDC15_YEAST Cell division control protein 15
          Length = 974

 Score =  171 bits (434), Expect = 2e-42
 Identities = 98/256 (38%), Positives = 146/256 (57%), Gaps = 2/256 (0%)
 Frame = -1

Query: 868 IGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFN--IQALSLERDLNKYREKIQHERIV 695
           IGRG++G V+K     +D+  A+K +    ++  N  +  +SL ++LN       H  IV
Sbjct: 31  IGRGSYGVVYKAINKHTDQVVAIKEVVYENDEELNDIMAEISLLKNLN-------HNNIV 83

Query: 694 KYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQSDI 515
           KY G IR   ++YI +EY   GS+RR +I   +  L E + K Y  Q L GL++LH   +
Sbjct: 84  KYHGFIRKSYELYILLEYCANGSLRR-LISRSSTGLSENESKTYVTQTLLGLKYLHGEGV 142

Query: 514 IHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKDKVRNLCGTANYIAPEIINDESYDFK 335
           IHRDIK+ NILL ++   KLADFG+S    T+V      L GT N++APEI+ +      
Sbjct: 143 IHRDIKAANILLSADNTVKLADFGVS----TIVNSSALTLAGTLNWMAPEILGNRGASTL 198

Query: 334 VDIWSVGATIIEMLTGFPPYHGIHESAVIFKVGQNRKIEYPSELTNDFKNLLDQMLTTDP 155
            DIWS+GAT++EMLT  PPYH + ++ + + V +N     PS  +   K+ L +    + 
Sbjct: 199 SDIWSLGATVVEMLTKNPPYHNLTDANIYYAV-ENDTYYPPSSFSEPLKDFLSKCFVKNM 257

Query: 154 TKRSSADELLKSAFFN 107
            KR +AD+LLK  + N
Sbjct: 258 YKRPTADQLLKHVWIN 273
>sp|Q9Y2U5|M3K2_HUMAN Mitogen-activated protein kinase kinase kinase 2 (MAPK/ERK kinase
            kinase 2) (MEK kinase 2) (MEKK 2)
          Length = 618

 Score =  169 bits (429), Expect = 7e-42
 Identities = 105/266 (39%), Positives = 155/266 (58%), Gaps = 14/266 (5%)
 Frame = -1

Query: 868  IGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFNIQALSLERDLNKYREKIQ------H 707
            +G+GAFG V+   +  + RE AVK ++      F+  +    +++N    +IQ      H
Sbjct: 361  LGQGAFGRVYLCYDVDTGRELAVKQVQ------FDPDSPETSKEVNALECEIQLLKNFLH 414

Query: 706  ERIVKYFGAIRT--QKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQF 533
            ERIV+Y+G +R   +K + IFMEYMPGGSI+ Q+       L E   +KYT+QILEG+ +
Sbjct: 415  ERIVQYYGCLRDPQEKTLSIFMEYMPGGSIKDQL--KAYGALTENGTRKYTRQILEGVHY 472

Query: 532  LHQSDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKD--KVRNLCGTANYIAPEII 359
            LH + I+HRDIK  NIL DS GN KL DFG S  ++T+      ++++ GT  +++PE+I
Sbjct: 473  LHSNMILHRDIKGANILRDSTGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVI 532

Query: 358  NDESYDFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVG---QNRKI-EYPSELTNDF 191
            + + Y  K DIWSV  T++EMLT  PP+      A IFK+     N K+  + S+ T DF
Sbjct: 533  SGQGYGRKADIWSVACTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPKLPPHVSDYTRDF 592

Query: 190  KNLLDQMLTTDPTKRSSADELLKSAF 113
                 + +  +   R SADELL+  F
Sbjct: 593  L----KRIFVEAKLRPSADELLRHMF 614
>sp|Q61083|M3K2_MOUSE Mitogen-activated protein kinase kinase kinase 2 (MAPK/ERK kinase
            kinase 2) (MEK kinase 2) (MEKK 2)
          Length = 619

 Score =  166 bits (421), Expect = 6e-41
 Identities = 104/266 (39%), Positives = 154/266 (57%), Gaps = 14/266 (5%)
 Frame = -1

Query: 868  IGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFNIQALSLERDLNKYREKIQ------H 707
            +G+GAFG V+   +  + RE AVK ++      FN ++    +++N    +IQ      H
Sbjct: 362  LGQGAFGRVYLCYDVDTGRELAVKQVQ------FNPESPETSKEVNALECEIQLLKNLLH 415

Query: 706  ERIVKYFGAIRT--QKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQF 533
            ERIV+Y+G +R   +K + IFME  PGGSI+ Q+       L E   +KYT+QILEG+ +
Sbjct: 416  ERIVQYYGCLRDPQEKTLSIFMELSPGGSIKDQL--KAYGALTENVTRKYTRQILEGVHY 473

Query: 532  LHQSDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKD--KVRNLCGTANYIAPEII 359
            LH + I+HRDIK  NIL DS GN KL DFG S  ++T+      ++++ GT  +++PE+I
Sbjct: 474  LHSNMIVHRDIKGANILRDSTGNIKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVI 533

Query: 358  NDESYDFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVG---QNRKI-EYPSELTNDF 191
            + E Y  K DIWSV  T++EMLT  PP+      A IFK+     N K+  + S+ T DF
Sbjct: 534  SGEGYGRKADIWSVACTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPKLPPHVSDYTRDF 593

Query: 190  KNLLDQMLTTDPTKRSSADELLKSAF 113
                 + +  +   R SA+ELL+  F
Sbjct: 594  L----KRIFVEAKLRPSAEELLRHMF 615
>sp|O22040|M3K1_ARATH Mitogen-activated protein kinase kinase kinase 1 (Arabidospsis
           NPK1-related protein kinase 1)
          Length = 666

 Score =  163 bits (412), Expect = 7e-40
 Identities = 103/263 (39%), Positives = 143/263 (54%), Gaps = 7/263 (2%)
 Frame = -1

Query: 880 KTDCIGRGAFGTVFKTKESQSDREFAVKTLKIMLN----DNFNIQALSLERDLNKYREKI 713
           K   IGRGAFGTV+      S    AVK + I  N    +        LE ++ K  + +
Sbjct: 71  KGQLIGRGAFGTVYMGMNLDSGELLAVKQVLIAANFASKEKTQAHIQELEEEV-KLLKNL 129

Query: 712 QHERIVKYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQF 533
            H  IV+Y G +R    + I +E++PGGSI   + K    P PE  V+ YT+Q+L GL++
Sbjct: 130 SHPNIVRYLGTVREDDTLNILLEFVPGGSISSLLEKFG--PFPESVVRTYTRQLLLGLEY 187

Query: 532 LHQSDIIHRDIKSENILLDSNGNAKLADFGLSSFV-KTVVKDKVRNLCGTANYIAPEIIN 356
           LH   I+HRDIK  NIL+D+ G  KLADFG S  V +       +++ GT  ++APE+I 
Sbjct: 188 LHNHAIMHRDIKGANILVDNKGCIKLADFGASKQVAELATMTGAKSMKGTPYWMAPEVIL 247

Query: 355 DESYDFKVDIWSVGATIIEMLTGFPPY-HGIHESAVIFKVGQNRK-IEYPSELTNDFKNL 182
              + F  DIWSVG T+IEM+TG  P+     E A IF +G  +     P  L++D K+ 
Sbjct: 248 QTGHSFSADIWSVGCTVIEMVTGKAPWSQQYKEVAAIFFIGTTKSHPPIPDTLSSDAKDF 307

Query: 181 LDQMLTTDPTKRSSADELLKSAF 113
           L + L   P  R +A ELLK  F
Sbjct: 308 LLKCLQEVPNLRPTASELLKHPF 330
>sp|P41892|CDC7_SCHPO Cell division control protein 7
          Length = 1062

 Score =  160 bits (405), Expect = 4e-39
 Identities = 93/254 (36%), Positives = 142/254 (55%)
 Frame = -1

Query: 883 TKTDCIGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFNIQALSLERDLNKYREKIQHE 704
           T  DC+G+GAFG V++    ++    AVK +K+      ++  + +E DL K    + H 
Sbjct: 10  TLGDCLGKGAFGAVYRGLNIKNGETVAVKKVKLSKMLKSDLSVIKMEIDLLK---NLDHP 66

Query: 703 RIVKYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQ 524
            IVKY G+ +T   + I +EY   GS+R  I KN  K +PE  V  YT Q+L+GL +LH 
Sbjct: 67  NIVKYRGSYQTNDSLCIILEYCENGSLR-SICKNFGK-IPENLVALYTFQVLQGLLYLHN 124

Query: 523 SDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKDKVRNLCGTANYIAPEIINDESY 344
             +IHRDIK  NIL   +G  KLADFG+++ +  +    V    G+  ++APE+I     
Sbjct: 125 QGVIHRDIKGANILTTKDGTIKLADFGVATKINALEDHSV---VGSPYWMAPEVIELVGA 181

Query: 343 DFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVGQNRKIEYPSELTNDFKNLLDQMLT 164
               DIWSVG T+IE+L G PPY+ +  ++ +F++ ++     PS +++  K+ L Q   
Sbjct: 182 TTASDIWSVGCTVIELLDGNPPYYDLDPTSALFRMVKDEHPPLPSNISSAAKSFLMQCFQ 241

Query: 163 TDPTKRSSADELLK 122
            DP  R    +LLK
Sbjct: 242 KDPNLRIKTRKLLK 255
>sp|Q9FZ36|M3K2_ARATH Mitogen-activated protein kinase kinase kinase 2 (Arabidospsis
           NPK1-related protein kinase 2)
          Length = 651

 Score =  160 bits (404), Expect = 6e-39
 Identities = 100/263 (38%), Positives = 142/263 (53%), Gaps = 7/263 (2%)
 Frame = -1

Query: 880 KTDCIGRGAFGTVFKTKESQSDREFAVKTLKIMLN----DNFNIQALSLERDLNKYREKI 713
           K   IGRGAFGTV+      S    AVK + I  N    +        LE ++ K  + +
Sbjct: 70  KGQLIGRGAFGTVYMGMNLDSGELLAVKQVLITSNCASKEKTQAHIQELEEEV-KLLKNL 128

Query: 712 QHERIVKYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQF 533
            H  IV+Y G +R  + + I +E++PGGSI   + K      PE  V+ YT Q+L GL++
Sbjct: 129 SHPNIVRYLGTVREDETLNILLEFVPGGSISSLLEKFG--AFPESVVRTYTNQLLLGLEY 186

Query: 532 LHQSDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVK-DKVRNLCGTANYIAPEIIN 356
           LH   I+HRDIK  NIL+D+ G  KLADFG S  V  +      +++ GT  ++APE+I 
Sbjct: 187 LHNHAIMHRDIKGANILVDNQGCIKLADFGASKQVAELATISGAKSMKGTPYWMAPEVIL 246

Query: 355 DESYDFKVDIWSVGATIIEMLTGFPPY-HGIHESAVIFKVGQNRK-IEYPSELTNDFKNL 182
              + F  DIWSVG T+IEM+TG  P+     E A IF +G  +     P  +++D  + 
Sbjct: 247 QTGHSFSADIWSVGCTVIEMVTGKAPWSQQYKEIAAIFHIGTTKSHPPIPDNISSDANDF 306

Query: 181 LDQMLTTDPTKRSSADELLKSAF 113
           L + L  +P  R +A ELLK  F
Sbjct: 307 LLKCLQQEPNLRPTASELLKHPF 329
>sp|Q9P289|MST4_HUMAN Serine/threonine-protein kinase MST4 (STE20-like kinase MST4)
           (MST-4) (Mammalian STE20-like protein kinase 4)
           (Serine/threonine-protein kinase MASK) (Mst3 and
           SOK1-related kinase)
          Length = 416

 Score =  157 bits (398), Expect = 3e-38
 Identities = 89/257 (34%), Positives = 140/257 (54%)
 Frame = -1

Query: 883 TKTDCIGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFNIQALSLERDLNKYREKIQHE 704
           TK + IG+G+FG VFK  ++++ +  A+K + +   +    +   +++++    +     
Sbjct: 25  TKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDL---EEAEDEIEDIQQEITVLSQ-CDSS 80

Query: 703 RIVKYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQ 524
            + KY+G+     K++I MEY+ GGS    +      P  E Q+    K+IL+GL +LH 
Sbjct: 81  YVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHS 137

Query: 523 SDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKDKVRNLCGTANYIAPEIINDESY 344
              IHRDIK+ N+LL   G+ KLADFG++  + T  + K     GT  ++APE+I   +Y
Sbjct: 138 EKKIHRDIKAANVLLSEQGDVKLADFGVAGQL-TDTQIKRNTFVGTPFWMAPEVIQQSAY 196

Query: 343 DFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVGQNRKIEYPSELTNDFKNLLDQMLT 164
           D K DIWS+G T IE+  G PP   +H   V+F + +N       + T  FK  +D  L 
Sbjct: 197 DSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLVGDFTKSFKEFIDACLN 256

Query: 163 TDPTKRSSADELLKSAF 113
            DP+ R +A ELLK  F
Sbjct: 257 KDPSFRPTAKELLKHKF 273
>sp|Q99JT2|MST4_MOUSE Serine/threonine-protein kinase MST4 (STE20-like kinase MST4)
           (MST-4) (Mammalian STE20-like protein kinase 4)
          Length = 416

 Score =  157 bits (397), Expect = 4e-38
 Identities = 89/257 (34%), Positives = 140/257 (54%)
 Frame = -1

Query: 883 TKTDCIGRGAFGTVFKTKESQSDREFAVKTLKIMLNDNFNIQALSLERDLNKYREKIQHE 704
           TK + IG+G+FG VFK  ++++ +  A+K + +   +    +   +++++    +     
Sbjct: 25  TKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDL---EEAEDEIEDIQQEITVLSQ-CDSS 80

Query: 703 RIVKYFGAIRTQKKIYIFMEYMPGGSIRRQIIKNENKPLPEIQVKKYTKQILEGLQFLHQ 524
            + KY+G+     K++I MEY+ GGS    +      P  E Q+    K+IL+GL +LH 
Sbjct: 81  YVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHS 137

Query: 523 SDIIHRDIKSENILLDSNGNAKLADFGLSSFVKTVVKDKVRNLCGTANYIAPEIINDESY 344
              IHRDIK+ N+LL   G+ KLADFG++  + T  + K     GT  ++APE+I   +Y
Sbjct: 138 EKKIHRDIKAANVLLSEQGDVKLADFGVAGQL-TDTQIKRNTFVGTPFWMAPEVIQQSAY 196

Query: 343 DFKVDIWSVGATIIEMLTGFPPYHGIHESAVIFKVGQNRKIEYPSELTNDFKNLLDQMLT 164
           D K DIWS+G T IE+  G PP   +H   V+F + +N       + T  FK  +D  L 
Sbjct: 197 DSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLIGDFTKSFKEFIDACLN 256

Query: 163 TDPTKRSSADELLKSAF 113
            DP+ R +A ELLK  F
Sbjct: 257 KDPSFRPTAKELLKHKF 273
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,462,528
Number of Sequences: 369166
Number of extensions: 1930226
Number of successful extensions: 10334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7031
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)