Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_02132 (887 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytos... 35 0.21 sp|P32997|VG07_VARV Protein G7 32 1.8 sp|O74338|YH25_SCHPO Protein C1A4.05 in chromosome II 32 2.4 sp|P68716|VG07_VACCV Protein G7 >gi|56404734|sp|P68715|VG07... 31 4.0 sp|P21028|VG07_VACCC Protein G7 31 4.0 sp|Q9J563|V170_FOWPV Protein FPV170 31 5.3 sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chrom... 30 6.9 sp|Q96M83|CCDC7_HUMAN Coiled-coil domain-containing protein 7 30 9.0 sp|P0A940|YAET_ECOLI Outer membrane protein assembly factor... 30 9.0 sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, deca... 30 9.0
>sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytosolic (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 478 Score = 35.4 bits (80), Expect = 0.21 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%) Frame = +2 Query: 581 LTDEDYQYIKELIHQNISITLQ------------EIKNKLFNEKQISVSISTIQRAIADF 724 L +ED+Q + IH+ I +TLQ E K KL +++I +++T++ + +F Sbjct: 407 LLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENF 466 Query: 725 NYTF 736 F Sbjct: 467 ASNF 470
>sp|P32997|VG07_VARV Protein G7 Length = 371 Score = 32.3 bits (72), Expect = 1.8 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%) Frame = +2 Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547 Y+ T+ N+ KN++S P N + + CSK +D S YK G TG Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSKMLDTSEKYSKGYKTDGAVTSPLTG 309 Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631 NT A + +K T +Y YI ++ N+ Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|O74338|YH25_SCHPO Protein C1A4.05 in chromosome II Length = 700 Score = 32.0 bits (71), Expect = 2.4 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Frame = +2 Query: 527 KKTGRTGQNTQYAGNKKKLTDEDYQYIKEL------IHQNISITLQEIKNKLFNEKQISV 688 K G G N+ + G ++++ +D + I++ +H+ + LQ+ N ++++V Sbjct: 270 KPVGSDGSNSNFNGGEEQMDSKDQEEIQDYLNSLLSVHEKDGVLLQKFHNSYVQYQKLAV 329 Query: 689 SISTIQRAIAD 721 ++S + AD Sbjct: 330 ALSKYENFDAD 340
>sp|P68716|VG07_VACCV Protein G7 sp|P68715|VG07_VACCA Protein G7 Length = 371 Score = 31.2 bits (69), Expect = 4.0 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%) Frame = +2 Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547 Y+ T+ N+ KN++S P N + + CS+ +D S YK G TG Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSRMLDTSEKYSKGYKTDGAVTSPLTG 309 Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631 NT A + +K T +Y YI ++ N+ Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|P21028|VG07_VACCC Protein G7 Length = 371 Score = 31.2 bits (69), Expect = 4.0 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%) Frame = +2 Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547 Y+ T+ N+ KN++S P N + + CS+ +D S YK G TG Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSRMLDTSEKYSKGYKTDGAVTSPLTG 309 Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631 NT A + +K T +Y YI ++ N+ Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|Q9J563|V170_FOWPV Protein FPV170 Length = 374 Score = 30.8 bits (68), Expect = 5.3 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 10/112 (8%) Frame = +2 Query: 446 RNPNTENSMRNLICSKYMDEQSI-----ISVYKKTGRTGQNTQYAGNKKKLTDEDYQYIK 610 R+ SM N I K EQ I + VY K T N Y+ N KK T+E Q +K Sbjct: 81 RSAANVKSMLNKITDKETKEQFIRIFKDMLVYAKV-ITSINNMYS-NMKKDTNEIVQDLK 138 Query: 611 ELIHQNISITLQEIKN-----KLFNEKQISVSISTIQRAIADFNYTFKRVKL 751 +++ I ++ N K+ E S I TI + +AD NY K + L Sbjct: 139 KIL--GIVSLIKSANNEHQAYKILMENN-SFIIRTINKVLADSNYIIKIIAL 187
>sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chromosome X Length = 629 Score = 30.4 bits (67), Expect = 6.9 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Frame = +2 Query: 527 KKTGRTGQNTQYAGNKKKLTDEDYQYI--KELIHQNISITLQEIKNKLFNEKQISVSIST 700 KK G+T + + A +K+T+E+ + I K+ + + + L++ + K+ EK + + Sbjct: 96 KKRGKTAKKAKKANRAQKITEEEIEAIKKKKKLDADKAYELRQEQMKIRQEKIDASDRNK 155 Query: 701 IQRAIADFNYTFKRV---KLIPEAQNYDKNINVRYE 799 I R +A R KL PE + D+++ E Sbjct: 156 IYRRLAQTAVDMLRKEERKLPPEIKQLDEDLEYYVE 191
>sp|Q96M83|CCDC7_HUMAN Coiled-coil domain-containing protein 7 Length = 486 Score = 30.0 bits (66), Expect = 9.0 Identities = 20/75 (26%), Positives = 37/75 (49%) Frame = +2 Query: 530 KTGRTGQNTQYAGNKKKLTDEDYQYIKELIHQNISITLQEIKNKLFNEKQISVSISTIQR 709 KT + + ++KK++ E IKE + Q + EI+NK+ E Q+ ++ ++ Sbjct: 345 KTVKKKDKGKSEDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQE-QLKQALQEAEK 403 Query: 710 AIADFNYTFKRVKLI 754 A NY + KL+ Sbjct: 404 AKHQLNYFLNQEKLL 418
>sp|P0A940|YAET_ECOLI Outer membrane protein assembly factor yaeT precursor (Omp85) sp|P0A943|YAET_SHIFL Outer membrane protein assembly factor yaeT precursor sp|P0A941|YAET_ECOL6 Outer membrane protein assembly factor yaeT precursor sp|P0A942|YAET_ECO57 Outer membrane protein assembly factor yaeT precursor Length = 810 Score = 30.0 bits (66), Expect = 9.0 Identities = 11/45 (24%), Positives = 26/45 (57%) Frame = +2 Query: 659 KLFNEKQISVSISTIQRAIADFNYTFKRVKLIPEAQNYDKNINVR 793 +L+N +++ I++ + + Y + RV+ +PE + DK + +R Sbjct: 294 ELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLR 338
>sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, decarboxylating Length = 492 Score = 30.0 bits (66), Expect = 9.0 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = +2 Query: 542 TGQNTQYAGNKKKLTD--EDYQYIKELIHQNISITLQEIKNKLFNEKQISVSISTIQRAI 715 TG NT++ G+KK+L D ED Y ++I L K + K + I+ + R Sbjct: 308 TGPNTKFTGDKKQLIDDLEDALYASKIISYAQGFMLMREAAKEYGWKLNNAGIALMWRGG 367 Query: 716 ADFNYTFKRVKLIPEAQNYDKNI 784 F +K I EA D N+ Sbjct: 368 CIIRSVF--LKDITEAFREDPNL 388
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,540,112 Number of Sequences: 369166 Number of extensions: 1143153 Number of successful extensions: 3224 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3219 length of database: 68,354,980 effective HSP length: 110 effective length of database: 48,034,130 effective search space used: 8886314050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)