Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J05
(887 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytos... 35 0.21
sp|P32997|VG07_VARV Protein G7 32 1.8
sp|O74338|YH25_SCHPO Protein C1A4.05 in chromosome II 32 2.4
sp|P68716|VG07_VACCV Protein G7 >gi|56404734|sp|P68715|VG07... 31 4.0
sp|P21028|VG07_VACCC Protein G7 31 4.0
sp|Q9J563|V170_FOWPV Protein FPV170 31 5.3
sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chrom... 30 6.9
sp|Q96M83|CCDC7_HUMAN Coiled-coil domain-containing protein 7 30 9.0
sp|P0A940|YAET_ECOLI Outer membrane protein assembly factor... 30 9.0
sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, deca... 30 9.0
>sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytosolic (Serine methylase)
(Glycine hydroxymethyltransferase) (SHMT)
Length = 478
Score = 35.4 bits (80), Expect = 0.21
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = +2
Query: 581 LTDEDYQYIKELIHQNISITLQ------------EIKNKLFNEKQISVSISTIQRAIADF 724
L +ED+Q + IH+ I +TLQ E K KL +++I +++T++ + +F
Sbjct: 407 LLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENF 466
Query: 725 NYTF 736
F
Sbjct: 467 ASNF 470
>sp|P32997|VG07_VARV Protein G7
Length = 371
Score = 32.3 bits (72), Expect = 1.8
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Frame = +2
Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547
Y+ T+ N+ KN++S P N + + CSK +D S YK G TG
Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSKMLDTSEKYSKGYKTDGAVTSPLTG 309
Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631
NT A + +K T +Y YI ++ N+
Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|O74338|YH25_SCHPO Protein C1A4.05 in chromosome II
Length = 700
Score = 32.0 bits (71), Expect = 2.4
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 527 KKTGRTGQNTQYAGNKKKLTDEDYQYIKEL------IHQNISITLQEIKNKLFNEKQISV 688
K G G N+ + G ++++ +D + I++ +H+ + LQ+ N ++++V
Sbjct: 270 KPVGSDGSNSNFNGGEEQMDSKDQEEIQDYLNSLLSVHEKDGVLLQKFHNSYVQYQKLAV 329
Query: 689 SISTIQRAIAD 721
++S + AD
Sbjct: 330 ALSKYENFDAD 340
>sp|P68716|VG07_VACCV Protein G7
sp|P68715|VG07_VACCA Protein G7
Length = 371
Score = 31.2 bits (69), Expect = 4.0
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Frame = +2
Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547
Y+ T+ N+ KN++S P N + + CS+ +D S YK G TG
Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSRMLDTSEKYSKGYKTDGAVTSPLTG 309
Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631
NT A + +K T +Y YI ++ N+
Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|P21028|VG07_VACCC Protein G7
Length = 371
Score = 31.2 bits (69), Expect = 4.0
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Frame = +2
Query: 386 YISRTNITMENAKDTKNRRSRNPNTENSMRNLICSKYMDEQSIISV-YKKTGR-----TG 547
Y+ T+ N+ KN++S P N + + CS+ +D S YK G TG
Sbjct: 250 YLPEVISTIANSNIIKNKKSIFPANINDKQIMECSRMLDTSEKYSKGYKTDGAVTSPLTG 309
Query: 548 QNT------QYAGNKKKLTDEDYQYIKELIHQNI 631
NT A + +K T +Y YI ++ N+
Sbjct: 310 NNTITTFIPISASDMQKFTILEYLYIMRVMANNV 343
>sp|Q9J563|V170_FOWPV Protein FPV170
Length = 374
Score = 30.8 bits (68), Expect = 5.3
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Frame = +2
Query: 446 RNPNTENSMRNLICSKYMDEQSI-----ISVYKKTGRTGQNTQYAGNKKKLTDEDYQYIK 610
R+ SM N I K EQ I + VY K T N Y+ N KK T+E Q +K
Sbjct: 81 RSAANVKSMLNKITDKETKEQFIRIFKDMLVYAKV-ITSINNMYS-NMKKDTNEIVQDLK 138
Query: 611 ELIHQNISITLQEIKN-----KLFNEKQISVSISTIQRAIADFNYTFKRVKL 751
+++ I ++ N K+ E S I TI + +AD NY K + L
Sbjct: 139 KIL--GIVSLIKSANNEHQAYKILMENN-SFIIRTINKVLADSNYIIKIIAL 187
>sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chromosome X
Length = 629
Score = 30.4 bits (67), Expect = 6.9
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 527 KKTGRTGQNTQYAGNKKKLTDEDYQYI--KELIHQNISITLQEIKNKLFNEKQISVSIST 700
KK G+T + + A +K+T+E+ + I K+ + + + L++ + K+ EK + +
Sbjct: 96 KKRGKTAKKAKKANRAQKITEEEIEAIKKKKKLDADKAYELRQEQMKIRQEKIDASDRNK 155
Query: 701 IQRAIADFNYTFKRV---KLIPEAQNYDKNINVRYE 799
I R +A R KL PE + D+++ E
Sbjct: 156 IYRRLAQTAVDMLRKEERKLPPEIKQLDEDLEYYVE 191
>sp|Q96M83|CCDC7_HUMAN Coiled-coil domain-containing protein 7
Length = 486
Score = 30.0 bits (66), Expect = 9.0
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 530 KTGRTGQNTQYAGNKKKLTDEDYQYIKELIHQNISITLQEIKNKLFNEKQISVSISTIQR 709
KT + + ++KK++ E IKE + Q + EI+NK+ E Q+ ++ ++
Sbjct: 345 KTVKKKDKGKSEDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQE-QLKQALQEAEK 403
Query: 710 AIADFNYTFKRVKLI 754
A NY + KL+
Sbjct: 404 AKHQLNYFLNQEKLL 418
>sp|P0A940|YAET_ECOLI Outer membrane protein assembly factor yaeT precursor (Omp85)
sp|P0A943|YAET_SHIFL Outer membrane protein assembly factor yaeT precursor
sp|P0A941|YAET_ECOL6 Outer membrane protein assembly factor yaeT precursor
sp|P0A942|YAET_ECO57 Outer membrane protein assembly factor yaeT precursor
Length = 810
Score = 30.0 bits (66), Expect = 9.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 659 KLFNEKQISVSISTIQRAIADFNYTFKRVKLIPEAQNYDKNINVR 793
+L+N +++ I++ + + Y + RV+ +PE + DK + +R
Sbjct: 294 ELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLR 338
>sp|P78812|6PGD_SCHPO 6-phosphogluconate dehydrogenase, decarboxylating
Length = 492
Score = 30.0 bits (66), Expect = 9.0
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 542 TGQNTQYAGNKKKLTD--EDYQYIKELIHQNISITLQEIKNKLFNEKQISVSISTIQRAI 715
TG NT++ G+KK+L D ED Y ++I L K + K + I+ + R
Sbjct: 308 TGPNTKFTGDKKQLIDDLEDALYASKIISYAQGFMLMREAAKEYGWKLNNAGIALMWRGG 367
Query: 716 ADFNYTFKRVKLIPEAQNYDKNI 784
F +K I EA D N+
Sbjct: 368 CIIRSVF--LKDITEAFREDPNL 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,540,112
Number of Sequences: 369166
Number of extensions: 1143153
Number of successful extensions: 3224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3219
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)