Planaria EST Database


DrC_02096

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02096
         (590 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08775|RPB1_MOUSE  DNA-directed RNA polymerase II largest...    37   0.048
sp|P24928|RPB1_HUMAN  DNA-directed RNA polymerase II largest...    37   0.048
sp|Q9SX33|ALA9_ARATH  Putative phospholipid-transporting ATP...    31   2.6  
sp|Q6RET7|CCAMK_MEDTR  Calcium and calcium/calmodulin-depend...    30   4.5  
sp|Q80YE7|DAPK1_MOUSE  Death-associated protein kinase 1 (DA...    30   4.5  
sp|P35587|HYPA_HYPLI  Hypodermin A precursor (HA)                  30   5.9  
sp|P35074|RPB1_CAEBR  DNA-directed RNA polymerase II largest...    30   5.9  
sp|P53355|DAPK1_HUMAN  Death-associated protein kinase 1 (DA...    30   5.9  
sp|Q07250|KCCS_MALDO  Calcium/calmodulin-dependent serine/th...    29   7.7  
sp|P69169|COATA_BPF1  Coat protein A precursor (G3P) (Minor ...    29   7.7  
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = +1

Query: 265  EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
            E+D K MT  ++TM +QI   +      DL+    DDN EK VL++ I  + +  M  + 
Sbjct: 1215 ELDRKHMTDRKLTM-EQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEE 1273

Query: 445  EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMV 573
            E+V +          ++DD  +  I+  ++ +M ++ +  I  V
Sbjct: 1274 EVVDK----------MDDDVFLRCIESNMLTDMTLQGIEQISKV 1307
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = +1

Query: 265  EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
            E+D K MT  ++TM +QI   +      DL+    DDN EK VL++ I  + +  M  + 
Sbjct: 1215 ELDRKHMTDRKLTM-EQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEE 1273

Query: 445  EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMV 573
            E+V +          ++DD  +  I+  ++ +M ++ +  I  V
Sbjct: 1274 EVVDK----------MDDDVFLRCIESNMLTDMTLQGIEQISKV 1307
>sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9 (Aminophospholipid
            flippase 9)
          Length = 1200

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +1

Query: 307  MKQIIRNLKTPNMVDLHRAIEDDNLEK----SVLKVIIPGNLDISMS--SQVEIVVEHQL 468
            MKQII NL+TP +  L +  E D + K    +VL  II G   +  S  +   ++++   
Sbjct: 758  MKQIIINLETPEIQSLEKTGEKDVIAKASKENVLSQIINGKTQLKYSGGNAFALIID--- 814

Query: 469  GGGHQADLEDDTVVAVIDQIMKEMAMKSMAVI 564
            G      L+DD     I  I  E+A+   +VI
Sbjct: 815  GKSLAYALDDD-----IKHIFLELAVSCASVI 841
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
           kinase DMI-3 (Does not make infections protein 3) (CCaMK
           DMI3) (MtCCaMK)
          Length = 523

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +1

Query: 259 QEEVDTKGMTRERITMMKQIIRNLKT-PNMVDLHRAIEDDNLEKSVLKVIIPGNL----- 420
           Q  V    +T E I +M++I+ N+   PN++DL+   ED N    VL++   G L     
Sbjct: 80  QVSVSDTLLTNE-ILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIV 138

Query: 421 -DISMSSQVEIVVEHQLGGGHQA 486
                S      V HQ+  G +A
Sbjct: 139 AQDKYSETEAATVVHQIASGLEA 161
>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 (DAP kinase 1)
          Length = 1442

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 277 KGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
           +G++RE I     I++ ++ PN++ LH   E+      +L+++  G L
Sbjct: 54  RGVSREDIEREVSILKEIRHPNVITLHEVYENKTDVILILELVAGGEL 101
>sp|P35587|HYPA_HYPLI Hypodermin A precursor (HA)
          Length = 256

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 505 LYRPPGLPDDLRLIDVPRLFPPDCSSK 425
           L  PPG+PD LR +DV  +    C+S+
Sbjct: 157 LVPPPGIPDQLRSVDVKIIHREKCASR 183
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subunit
          Length = 1853

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
 Frame = +1

Query: 265  EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
            E+D K M  +++TM + I   +      D+H    DDN EK V ++ I G  D     Q 
Sbjct: 1209 ELDRKRMVDKKLTM-EMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGE-DKGAEGQE 1266

Query: 445  EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMVMITK 585
            E V +          +EDD  +  I+  ++ ++ ++ +  I  V + +
Sbjct: 1267 EQVDK----------MEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQ 1304
>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DAP kinase 1)
          Length = 1432

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 277 KGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
           +G++RE I     I++ ++ PN++ LH   E+      +L+++  G L
Sbjct: 54  RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101
>sp|Q07250|KCCS_MALDO Calcium/calmodulin-dependent serine/threonine-protein kinase
          Length = 415

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 298 ITMMKQIIRNLKT-PNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
           I +M++I+ N+   PN++DL+   ED+N    VL++   G L
Sbjct: 94  ILVMRKIVENVSPHPNVIDLYDVYEDENGVHLVLELCSGGEL 135
>sp|P69169|COATA_BPF1 Coat protein A precursor (G3P) (Minor coat protein)
          Length = 424

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 439 DCSSKYPNFPELSPSERSFLNCRPLLLGANLPYSVS*D 326
           D S    NF +  PS    + CRP + GA  PY  S D
Sbjct: 351 DNSPLMNNFRQYLPSLPQSVECRPFVFGAGKPYEFSID 388
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.130    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,307,771
Number of Sequences: 369166
Number of extensions: 649238
Number of successful extensions: 2379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2378
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)