Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_O05
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest... 37 0.048
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest... 37 0.048
sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATP... 31 2.6
sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-depend... 30 4.5
sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 (DA... 30 4.5
sp|P35587|HYPA_HYPLI Hypodermin A precursor (HA) 30 5.9
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest... 30 5.9
sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DA... 30 5.9
sp|Q07250|KCCS_MALDO Calcium/calmodulin-dependent serine/th... 29 7.7
sp|P69169|COATA_BPF1 Coat protein A precursor (G3P) (Minor ... 29 7.7
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 36.6 bits (83), Expect = 0.048
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +1
Query: 265 EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
E+D K MT ++TM +QI + DL+ DDN EK VL++ I + + M +
Sbjct: 1215 ELDRKHMTDRKLTM-EQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEE 1273
Query: 445 EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMV 573
E+V + ++DD + I+ ++ +M ++ + I V
Sbjct: 1274 EVVDK----------MDDDVFLRCIESNMLTDMTLQGIEQISKV 1307
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 36.6 bits (83), Expect = 0.048
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +1
Query: 265 EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
E+D K MT ++TM +QI + DL+ DDN EK VL++ I + + M +
Sbjct: 1215 ELDRKHMTDRKLTM-EQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEE 1273
Query: 445 EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMV 573
E+V + ++DD + I+ ++ +M ++ + I V
Sbjct: 1274 EVVDK----------MDDDVFLRCIESNMLTDMTLQGIEQISKV 1307
>sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9 (Aminophospholipid
flippase 9)
Length = 1200
Score = 30.8 bits (68), Expect = 2.6
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 307 MKQIIRNLKTPNMVDLHRAIEDDNLEK----SVLKVIIPGNLDISMS--SQVEIVVEHQL 468
MKQII NL+TP + L + E D + K +VL II G + S + ++++
Sbjct: 758 MKQIIINLETPEIQSLEKTGEKDVIAKASKENVLSQIINGKTQLKYSGGNAFALIID--- 814
Query: 469 GGGHQADLEDDTVVAVIDQIMKEMAMKSMAVI 564
G L+DD I I E+A+ +VI
Sbjct: 815 GKSLAYALDDD-----IKHIFLELAVSCASVI 841
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase DMI-3 (Does not make infections protein 3) (CCaMK
DMI3) (MtCCaMK)
Length = 523
Score = 30.0 bits (66), Expect = 4.5
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +1
Query: 259 QEEVDTKGMTRERITMMKQIIRNLKT-PNMVDLHRAIEDDNLEKSVLKVIIPGNL----- 420
Q V +T E I +M++I+ N+ PN++DL+ ED N VL++ G L
Sbjct: 80 QVSVSDTLLTNE-ILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIV 138
Query: 421 -DISMSSQVEIVVEHQLGGGHQA 486
S V HQ+ G +A
Sbjct: 139 AQDKYSETEAATVVHQIASGLEA 161
>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 (DAP kinase 1)
Length = 1442
Score = 30.0 bits (66), Expect = 4.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 277 KGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
+G++RE I I++ ++ PN++ LH E+ +L+++ G L
Sbjct: 54 RGVSREDIEREVSILKEIRHPNVITLHEVYENKTDVILILELVAGGEL 101
>sp|P35587|HYPA_HYPLI Hypodermin A precursor (HA)
Length = 256
Score = 29.6 bits (65), Expect = 5.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 505 LYRPPGLPDDLRLIDVPRLFPPDCSSK 425
L PPG+PD LR +DV + C+S+
Sbjct: 157 LVPPPGIPDQLRSVDVKIIHREKCASR 183
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subunit
Length = 1853
Score = 29.6 bits (65), Expect = 5.9
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +1
Query: 265 EVDTKGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNLDISMSSQV 444
E+D K M +++TM + I + D+H DDN EK V ++ I G D Q
Sbjct: 1209 ELDRKRMVDKKLTM-EMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGE-DKGAEGQE 1266
Query: 445 EIVVEHQLGGGHQADLEDDTVVAVID-QIMKEMAMKSMAVIEMVMITK 585
E V + +EDD + I+ ++ ++ ++ + I V + +
Sbjct: 1267 EQVDK----------MEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQ 1304
>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 (DAP kinase 1)
Length = 1432
Score = 29.6 bits (65), Expect = 5.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 277 KGMTRERITMMKQIIRNLKTPNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
+G++RE I I++ ++ PN++ LH E+ +L+++ G L
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101
>sp|Q07250|KCCS_MALDO Calcium/calmodulin-dependent serine/threonine-protein kinase
Length = 415
Score = 29.3 bits (64), Expect = 7.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 298 ITMMKQIIRNLKT-PNMVDLHRAIEDDNLEKSVLKVIIPGNL 420
I +M++I+ N+ PN++DL+ ED+N VL++ G L
Sbjct: 94 ILVMRKIVENVSPHPNVIDLYDVYEDENGVHLVLELCSGGEL 135
>sp|P69169|COATA_BPF1 Coat protein A precursor (G3P) (Minor coat protein)
Length = 424
Score = 29.3 bits (64), Expect = 7.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 439 DCSSKYPNFPELSPSERSFLNCRPLLLGANLPYSVS*D 326
D S NF + PS + CRP + GA PY S D
Sbjct: 351 DNSPLMNNFRQYLPSLPQSVECRPFVFGAGKPYEFSID 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.130 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,307,771
Number of Sequences: 369166
Number of extensions: 649238
Number of successful extensions: 2379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2378
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)