Planaria EST Database


DrC_02094

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02094
         (826 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25439|BRM_DROME  Homeotic gene regulator (Brahma protein)     162   1e-39
sp|P51531|SMCA2_HUMAN  Possible global transcription activat...   161   2e-39
sp|P51532|SMCA4_HUMAN  Possible global transcription activat...   155   1e-37
sp|O94421|SNF22_SCHPO  SNF2-family ATP dependent chromatin r...    87   4e-17
sp|Q9UTN6|SNF21_SCHPO  SNF2-family ATP dependent chromatin r...    86   1e-16
sp|Q86U86|PB1_HUMAN  Polybromo-1 protein (hPB1) (Polybromo-1...    70   9e-12
sp|P22082|SNF2_YEAST  Transcription regulatory protein SNF2 ...    68   3e-11
sp|P32597|STH1_YEAST  Nuclear protein STH1/NPS1 (Chromatin s...    67   5e-11
sp|Q09948|BRD1_SCHPO  Bromodomain protein brd1                     53   1e-06
sp|Q9UUK2|GCN5_SCHPO  Histone acetyltransferase gcn5               50   1e-05
>sp|P25439|BRM_DROME Homeotic gene regulator (Brahma protein)
          Length = 1638

 Score =  162 bits (409), Expect = 1e-39
 Identities = 104/281 (37%), Positives = 150/281 (53%), Gaps = 8/281 (2%)
 Frame = +1

Query: 7    RIRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALL-XXXXXXXXXXXXXXXXTINQ 183
            RI   AR+KLN+DEKVIQAGMFDQKST  +R+ +L+ +L                  IN 
Sbjct: 1231 RILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINM 1290

Query: 184  MLARSEEEFEIYQRMDIERELNEKNKPVVKCRLLVADEIPENIDYNDSLDEEVQQVQDDY 363
            M+ARSEEE EI++RMD ER+  ++     + RL+   E+P   D+    D+EV++    Y
Sbjct: 1291 MIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELP---DWLTKDDDEVERFHYQY 1347

Query: 364  -------MGKRNRKEVDYSDALMEHEFLKAIDXXXXXXXXXSQXXXXXXXXXXXNEGSSE 522
                    G R RKEVDY+D+L E E+LKAID                      +E   E
Sbjct: 1348 DEDTILGRGSRQRKEVDYTDSLTEKEWLKAID-----------------DGAEFDEEEEE 1390

Query: 523  DESSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLMERMQMLLNIVIDYRDKDGRVLSE 702
            D+S +                             +  ++M  +++ VI + ++DGR LSE
Sbjct: 1391 DDSKRKRRKRKNRKEESDDDSLILKRRRRQNLDKRSKKQMHKIMSAVIKH-NQDGRTLSE 1449

Query: 703  PFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSIDD 825
            PFMKLPSR+ LPDYY+IIK+P+D ++I QR++D KY  +++
Sbjct: 1450 PFMKLPSRQRLPDYYEIIKRPVDIKKILQRIEDCKYADLNE 1490
>sp|P51531|SMCA2_HUMAN Possible global transcription activator SNF2L2 (SNF2-alpha)
            (SWI/SNF-related matrix associated actin dependent
            regulator of chromatin subfamily A member 2)
          Length = 1586

 Score =  161 bits (407), Expect = 2e-39
 Identities = 95/295 (32%), Positives = 157/295 (53%), Gaps = 22/295 (7%)
 Frame = +1

Query: 7    RIRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALLXXXXXXXXXXXXXXXXTINQM 186
            +I   A++KLNVD+KVIQAGMFDQKS+  +R+ +L+A+L                T+NQM
Sbjct: 1179 KILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQM 1238

Query: 187  LARSEEEFEIYQRMDIERELNEKNKPVVKCRLLVADEIPENIDYNDSLDEEVQQVQDDY- 363
            +AR EEEF+++ RMD++R   +   P  K RL+  DE+P  I  +D+  E +   +++  
Sbjct: 1239 IARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK 1298

Query: 364  ---MGKRNRKEVDYSDALMEHEFLKAIDXXXXXXXXXSQXXXXXXXXXXXNEGSSEDESS 534
                G R R++VDYSDAL E ++L+AI+                      ++  ++++  
Sbjct: 1299 IFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVE 1358

Query: 535  KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLMERMQMLLNIVIDYRD------------ 678
            K                             KL ++M  +++  I+Y+D            
Sbjct: 1359 K-----------AKKRRGRPPAEKLSPNPPKLTKQMNAIIDTCINYKDSCNVEKVPSNSQ 1407

Query: 679  ------KDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSIDD 825
                    GR LSE F++LPSRK+LP+YY++I+KP+DF++I++R++++KYRS+ D
Sbjct: 1408 LEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGD 1462
>sp|P51532|SMCA4_HUMAN Possible global transcription activator SNF2L4 (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 4)
          Length = 1647

 Score =  155 bits (393), Expect = 1e-37
 Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 40/313 (12%)
 Frame = +1

Query: 7    RIRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALLXXXXXXXXXXXXXXXX----- 171
            +I   A++KLNVD+KVIQAGMFDQKS+  +R+ +L+A+L                     
Sbjct: 1213 KILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFA 1272

Query: 172  ----------------------------TINQMLARSEEEFEIYQRMDIERELNEKNKPV 267
                                        T+NQM+AR EEEF+++ RMD++R   E   P 
Sbjct: 1273 HTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPK 1332

Query: 268  VKCRLLVADEIPENIDYNDSLDEEVQQVQDDYM----GKRNRKEVDYSDALMEHEFLKAI 435
             K RL+  DE+P  I  +D+  E +   +++      G R+RKEVDYSD+L E ++LKAI
Sbjct: 1333 RKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAI 1392

Query: 436  DXXXXXXXXXS--QXXXXXXXXXXXNEGSSEDESSKXXXXXXXXXXXXXXXXXXXXXXXX 609
            +            Q           + GSS   +S                         
Sbjct: 1393 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLS 1452

Query: 610  XXXXXKLMERMQMLLNIVIDYRDKD-GRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIR 786
                  L ++M+ +++ VI Y+D   GR LSE F++LPSRK+LP+YY++I+KP+DF++I+
Sbjct: 1453 PNPP-NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 1511

Query: 787  QRLKDNKYRSIDD 825
            +R++++KYRS++D
Sbjct: 1512 ERIRNHKYRSLND 1524
>sp|O94421|SNF22_SCHPO SNF2-family ATP dependent chromatin remodeling factor snf22
          Length = 1680

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 12/284 (4%)
 Frame = +1

Query: 10   IRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALL--XXXXXXXXXXXXXXXXTINQ 183
            I   A++KL++D KVIQAG FD KST ++R+ +L++LL                   +N+
Sbjct: 1321 ILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNE 1380

Query: 184  MLARSEEEFEIYQRMDIER---ELNEKNKPVVKCRLLVADEIPE--NIDYNDSLDEEVQQ 348
            +++R++EE  +++++D ER   ++  K KP+   RLL  +E+P+   ++ +    +   +
Sbjct: 1381 LISRTDEELVLFKKLDKERAATDIYGKGKPLE--RLLTVNELPDFYKVEVDSFAVQSSSE 1438

Query: 349  VQDDYMGKRNRKEVDYSDALMEHEFLKAIDXXXXXXXXXSQXXXXXXXXXXXNEGSS--- 519
            ++D Y+ ++ R+    S   +  + L  +D          +           N GSS   
Sbjct: 1439 LEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKR----GRPRKKTNSGSSLST 1494

Query: 520  --EDESSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLMERMQMLLNIVIDYRDKDGRV 693
                ESS                                ME  + L N+    + +DGR 
Sbjct: 1495 PLSQESS-----------LARSGRKNTPSYKQKALRRYCMEIFERLYNL----QSEDGRF 1539

Query: 694  LSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSIDD 825
            ++  F+  P+RK  PDYY IIK+P+   +I++ +K+++Y  + +
Sbjct: 1540 VNGLFLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGE 1583
>sp|Q9UTN6|SNF21_SCHPO SNF2-family ATP dependent chromatin remodeling factor snf21
          Length = 1199

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 7/274 (2%)
 Frame = +1

Query: 22   ARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALL--XXXXXXXXXXXXXXXXTINQMLAR 195
            A++KL++D KVIQAG FD KST ++R+ +L++LL                   +N++LAR
Sbjct: 874  AQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEILAR 933

Query: 196  SEEEFEIYQRM--DIERELNEKNKPVVKCRLLVADEIPENIDYNDSLDEEVQQVQDDYMG 369
             ++E  ++++M  D+ERE +   K   K RL+   E+PE     +  ++    +Q++ +G
Sbjct: 934  GDDELRLFKQMTEDLERE-SPYGKNKEKERLIQVSELPE-FYQREEPEKTTDLLQEEPLG 991

Query: 370  K--RNRKEVDYSDALMEHEFLKAIDXXXXXXXXXSQXXXXXXXXXXXNEGSSEDESSKXX 543
            +  R R  V Y +A+ + +++  +D                        G  +   +   
Sbjct: 992  RGARRRTPVVYDEAVRDAQWMAEMD---------------MESEARPTRGRPKRNIASVD 1036

Query: 544  XXXXXXXXXXXXXXXXXXXXXXXXXXXKLMERMQM-LLNIVIDYRDKDGRVLSEPFMKLP 720
                                        L+ R+ + +   V +  D +GR L++ F++LP
Sbjct: 1037 ETPALTLNGKPKKKRGPAPDTLTSEHRSLLRRVCLEIYKAVNELEDDNGRPLNKLFLELP 1096

Query: 721  SRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSID 822
            S+K  PDYY IIK P+    IR+ +    Y++++
Sbjct: 1097 SKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLE 1130
>sp|Q86U86|PB1_HUMAN Polybromo-1 protein (hPB1) (Polybromo-1D) (BRG1-associated factor
           180) (BAF180)
          Length = 1689

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
 Frame = +1

Query: 625 KLMERMQMLLNIVID----YRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQR 792
           K M  MQ  LN V +    Y DK GR LS  F++LPSR +LPDYY  IKKPMD ++IR  
Sbjct: 653 KYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSH 712

Query: 793 LKDNKYRSID 822
           +  NKY+ ID
Sbjct: 713 MMANKYQDID 722

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 23/58 (39%), Positives = 42/58 (72%)
 Frame = +1

Query: 649 LLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSID 822
           L N + DY+D+ GR+L E F++ P R++ PDYY+++ +P+D  +I+Q+LK  +Y  ++
Sbjct: 53  LYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN 110

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 28/64 (43%), Positives = 43/64 (67%)
 Frame = +1

Query: 628 LMERMQMLLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNK 807
           L E ++ LL  ++   +  GR++SE F KLPS+   PDYY IIK+P+D + I QR+++  
Sbjct: 182 LKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGS 241

Query: 808 YRSI 819
           Y+SI
Sbjct: 242 YKSI 245

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 25/58 (43%), Positives = 39/58 (67%)
 Frame = +1

Query: 649 LLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSID 822
           L + V   R+  G++++EPF  LPS+K  PDYY  IK P+  Q+IR +LK+ +Y ++D
Sbjct: 389 LYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLD 446

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +1

Query: 634 ERMQMLLNIVIDYRDK-DGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKY 810
           +RM++L N+V++ R+   GR L + FM  PS+KD PDYY II +PMD + I   ++++KY
Sbjct: 521 QRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKY 580
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 (SWI/SNF complex component
            SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1)
            (Transcription factor TYE3)
          Length = 1703

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
 Frame = +1

Query: 10   IRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALL-------XXXXXXXXXXXXXXX 168
            I   A  KL++D KVIQAG FD KST ++++  L++LL                      
Sbjct: 1221 ILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKD 1280

Query: 169  XTINQMLARSEEEFEIYQRMDIERELNEKNKPVVKCRLLVADEIPE--NIDYNDSLDEEV 342
              IN++LAR++EE  +  RMD +R   E+    VK RLL   E+P+  + D    L  E 
Sbjct: 1281 SEINEILARNDEEMAVLTRMDEDRSKKEEELG-VKSRLLEKSELPDIYSRDIGAELKREE 1339

Query: 343  QQVQDDYMGK--RNRKEVDYSDALMEHEFLKAID 438
             +    Y G+  R RK   Y+D + E ++L+  +
Sbjct: 1340 SESAAVYNGRGARERKTATYNDNMSEEQWLRQFE 1373

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +1

Query: 625  KLMERMQMLLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDN 804
            K+ ++   L +  ++Y ++ GR LS+ F+  PS+   PDYY IIK P+ F  I   ++  
Sbjct: 1549 KVAKQALDLYHFALNYENEAGRKLSDIFLSKPSKALYPDYYMIIKYPVAFDNINTHIETL 1608

Query: 805  KYRSIDD 825
             Y S+ +
Sbjct: 1609 AYNSLKE 1615
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
            protein STH1) (SNF2 homolog)
          Length = 1359

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
 Frame = +1

Query: 10   IRHEARFKLNVDEKVIQAGMFDQKSTDKDRKTYLKALL-XXXXXXXXXXXXXXXXTINQM 186
            I   A  KL++D KVIQAG FD KST ++++ +L+ L+                  +N  
Sbjct: 925  ILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKAELDDDELNDT 984

Query: 187  LARSEEEFEIYQRMDIERELNEK------NKPVVKCRLLVADEIPENIDYNDSLDEEVQQ 348
            LARS +E  ++ ++D ER   E+         V   RL+  DE+P+   + + ++E  ++
Sbjct: 985  LARSADEKILFDKIDKERMNQERADAKAQGLRVPPPRLIQLDELPK--VFREDIEEHFKK 1042

Query: 349  VQDDYMGK-RNRKEVDYSDALMEHEFLKAID 438
               + +G+ R +K V Y D L E +FL+A++
Sbjct: 1043 EDSEPLGRIRQKKRVYYDDGLTEEQFLEAVE 1073

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 39/67 (58%)
 Frame = +1

Query: 625  KLMERMQMLLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDN 804
            KL+E M+  L+ V      D    +  F KLPS++D PDY+ +I+KPM    I +  K+ 
Sbjct: 1257 KLVEEMREQLDEV------DSHPRTSIFEKLPSKRDYPDYFKVIEKPMAIDIILKNCKNG 1310

Query: 805  KYRSIDD 825
             Y+++++
Sbjct: 1311 TYKTLEE 1317
>sp|Q09948|BRD1_SCHPO Bromodomain protein brd1
          Length = 542

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 41/61 (67%)
 Frame = +1

Query: 640 MQMLLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSI 819
           +Q +L+ + + +D+ GR L + F+ LPS++  PDYY+IIK PM  + + +R K  +Y ++
Sbjct: 148 IQNILDALHEEKDEQGRFLIDIFIDLPSKRLYPDYYEIIKSPMTIKMLEKRFKKGEYTTL 207

Query: 820 D 822
           +
Sbjct: 208 E 208

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 37/59 (62%)
 Frame = +1

Query: 649 LLNIVIDYRDKDGRVLSEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSIDD 825
           +L  ++  +D +G    + F +LPS++  PDYY II+KP+ ++ +R + K  KY S+ D
Sbjct: 18  VLEALVGLKDNEGNPFDDIFEELPSKRYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGD 76
>sp|Q9UUK2|GCN5_SCHPO Histone acetyltransferase gcn5
          Length = 454

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 19/43 (44%), Positives = 33/43 (76%)
 Frame = +1

Query: 697 SEPFMKLPSRKDLPDYYDIIKKPMDFQRIRQRLKDNKYRSIDD 825
           S PFM+  S++D+PDYY++I+ PMD   +  RL++N+Y S+++
Sbjct: 365 SWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEE 407
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.316    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,787,413
Number of Sequences: 369166
Number of extensions: 1303091
Number of successful extensions: 4011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4001
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)