Planaria EST Database


DrC_02091

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02091
         (399 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q23157|INX11_CAEEL  Innexin-11                                  35   0.070
sp|Q22549|INX10_CAEEL  Innexin-10                                  32   0.35 
sp|P03139|VMSA_HBVAY  Major surface antigen precursor              32   0.59 
sp|Q05143|COX1_PROWI  Cytochrome c oxidase subunit 1 (Cytoch...    31   0.78 
sp|P31873|VMSA_HBV  Major surface antigen                          31   1.0  
sp|P03138|VMSA_HBVYW  Major surface antigen precursor              31   1.0  
sp|P17398|VMSA_HBVWJ  Major surface antigen precursor              31   1.0  
sp|P17397|VMSA_HBVWI  Major surface antigen precursor              31   1.0  
sp|P03140|VMSA_HBVDR  Major surface antigen precursor              31   1.0  
sp|P30019|VMSA_HBVDN  Major surface antigen                        31   1.0  
>sp|Q23157|INX11_CAEEL Innexin-11
          Length = 465

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 174 LSRWM*MCVLVIMLFIELWMVWMVFILLWFLFLCLMVWLAVRLAMW 311
           + R+   CVLVI +F E      +F+LLWF ++ L++   V L  W
Sbjct: 268 IQRYSVQCVLVINIFNE-----KIFVLLWFWYVILLLSSTVSLVQW 308
>sp|Q22549|INX10_CAEEL Innexin-10
          Length = 559

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 195 CVLVIMLFIELWMVWMVFILLWFLFLCLMVWLAVRLAMWV 314
           CVLVI +F E      +FILLWF +L L+V+       W+
Sbjct: 272 CVLVINIFNE-----KIFILLWFWYLALLVFTFGSFFYWL 306
>sp|P03139|VMSA_HBVAY Major surface antigen precursor
          Length = 389

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L  +VWL+V   MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPIVWLSVIWMMWYW 364
>sp|Q05143|COX1_PROWI Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
          Length = 514

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 210 MLFIELWMVWMVFILLWFLFLCLMV 284
           M  ++L  VW VFI  W L LCL V
Sbjct: 177 MSMLDLLFVWAVFITAWLLLLCLPV 201
>sp|P31873|VMSA_HBV Major surface antigen
          Length = 226

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 172 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 201
>sp|P03138|VMSA_HBVYW Major surface antigen precursor
          Length = 389

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 364
>sp|P17398|VMSA_HBVWJ Major surface antigen precursor
          Length = 389

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 364
>sp|P17397|VMSA_HBVWI Major surface antigen precursor
          Length = 389

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWFW 364
>sp|P03140|VMSA_HBVDR Major surface antigen precursor
          Length = 400

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 346 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 375
>sp|P30019|VMSA_HBVDN Major surface antigen
          Length = 226

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
           W+  +V  + WF+ L   VWL+V   MW W
Sbjct: 172 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 201
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,332,744
Number of Sequences: 369166
Number of extensions: 557346
Number of successful extensions: 2281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)