Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M23
(399 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q23157|INX11_CAEEL Innexin-11 35 0.070
sp|Q22549|INX10_CAEEL Innexin-10 32 0.35
sp|P03139|VMSA_HBVAY Major surface antigen precursor 32 0.59
sp|Q05143|COX1_PROWI Cytochrome c oxidase subunit 1 (Cytoch... 31 0.78
sp|P31873|VMSA_HBV Major surface antigen 31 1.0
sp|P03138|VMSA_HBVYW Major surface antigen precursor 31 1.0
sp|P17398|VMSA_HBVWJ Major surface antigen precursor 31 1.0
sp|P17397|VMSA_HBVWI Major surface antigen precursor 31 1.0
sp|P03140|VMSA_HBVDR Major surface antigen precursor 31 1.0
sp|P30019|VMSA_HBVDN Major surface antigen 31 1.0
>sp|Q23157|INX11_CAEEL Innexin-11
Length = 465
Score = 34.7 bits (78), Expect = 0.070
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 174 LSRWM*MCVLVIMLFIELWMVWMVFILLWFLFLCLMVWLAVRLAMW 311
+ R+ CVLVI +F E +F+LLWF ++ L++ V L W
Sbjct: 268 IQRYSVQCVLVINIFNE-----KIFVLLWFWYVILLLSSTVSLVQW 308
>sp|Q22549|INX10_CAEEL Innexin-10
Length = 559
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 195 CVLVIMLFIELWMVWMVFILLWFLFLCLMVWLAVRLAMWV 314
CVLVI +F E +FILLWF +L L+V+ W+
Sbjct: 272 CVLVINIFNE-----KIFILLWFWYLALLVFTFGSFFYWL 306
>sp|P03139|VMSA_HBVAY Major surface antigen precursor
Length = 389
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L +VWL+V MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPIVWLSVIWMMWYW 364
>sp|Q05143|COX1_PROWI Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 514
Score = 31.2 bits (69), Expect = 0.78
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 210 MLFIELWMVWMVFILLWFLFLCLMV 284
M ++L VW VFI W L LCL V
Sbjct: 177 MSMLDLLFVWAVFITAWLLLLCLPV 201
>sp|P31873|VMSA_HBV Major surface antigen
Length = 226
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 172 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 201
>sp|P03138|VMSA_HBVYW Major surface antigen precursor
Length = 389
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 364
>sp|P17398|VMSA_HBVWJ Major surface antigen precursor
Length = 389
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 364
>sp|P17397|VMSA_HBVWI Major surface antigen precursor
Length = 389
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 335 WLSLLVPFVQWFVGLSPTVWLSVIWMMWFW 364
>sp|P03140|VMSA_HBVDR Major surface antigen precursor
Length = 400
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 346 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 375
>sp|P30019|VMSA_HBVDN Major surface antigen
Length = 226
Score = 30.8 bits (68), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 228 WMVWMVFILLWFLFLCLMVWLAVRLAMWVW 317
W+ +V + WF+ L VWL+V MW W
Sbjct: 172 WLSLLVPFVQWFVGLSPTVWLSVIWMMWYW 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,332,744
Number of Sequences: 369166
Number of extensions: 557346
Number of successful extensions: 2281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)