Planaria EST Database


DrC_02088

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02088
         (730 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09463|RNF5_CAEEL  RING finger protein 5                       134   2e-31
sp|Q14527|SMRA3_HUMAN  SWI/SNF-related matrix-associated act...    55   2e-07
sp|Q00940|PEX10_PICAN  Peroxisome assembly protein PER8 (Per...    53   7e-07
sp|Q9UUF0|PEX10_SCHPO  Peroxisome assembly protein 10 (Perox...    53   7e-07
sp|Q95216|SMRA3_RABIT  SWI/SNF-related matrix-associated act...    53   9e-07
sp|Q9SYU4|PEX10_ARATH  Peroxisome assembly protein 10 (Perox...    52   1e-06
sp|Q9D9R0|RN125_MOUSE  RING finger protein 125                     51   3e-06
sp|Q6PCN7|SMRA3_MOUSE  SWI/SNF-related matrix-associated act...    51   3e-06
sp|Q9HCM9|TRI39_HUMAN  Tripartite motif protein 39 (RING fin...    51   3e-06
sp|O60683|PEX10_HUMAN  Peroxisome assembly protein 10 (Perox...    51   3e-06
>sp|Q09463|RNF5_CAEEL RING finger protein 5
          Length = 235

 Score =  134 bits (338), Expect = 2e-31
 Identities = 86/242 (35%), Positives = 110/242 (45%), Gaps = 44/242 (18%)
 Frame = +1

Query: 40  MAESANANSSEYPSGSGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRW 219
           MA    A S E  S S  D  A        F+CNICL+ +KD V+S+CGHLFCWPCL +W
Sbjct: 1   MASETKAPSEEPTSSSNKDESAR-------FECNICLDAAKDAVVSLCGHLFCWPCLSQW 53

Query: 220 IETQSPRATCPVCKAAISRDKVIPLYGRDSTDQRDPRDKIPPRPQGQRTESERXXXXXXX 399
           ++T+     CPVCK+AI  +KV+P+YGR   D  DPR K+PPRP+GQR+E          
Sbjct: 54  LDTRPNNQVCPVCKSAIDGNKVVPIYGRGG-DSSDPRKKVPPRPKGQRSEPPPQSFAGFN 112

Query: 400 XXXXXXIFRPGVDTGVNMSFGIGA----FPL--------GLFATTFNFS----------- 510
                 +   G    V+ SFGIG     FPL        G+F  +F  S           
Sbjct: 113 WGGDGGMMGGG-GPNVHFSFGIGTVNGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGAAA 171

Query: 511 -----GGNNPQNDPNFRETDAYS----------------IQQSELLSKVFLVIAGCCFLW 627
                GG N  ND     T  ++                 Q+ E LS +F  I      W
Sbjct: 172 AGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFW 231

Query: 628 LL 633
           LL
Sbjct: 232 LL 233
>sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 3 (Sucrose nonfermenting
            protein 2-like 3) (DNA binding protein/plasminogen
            activator inhibitor-1 regulator) (Helicase-like
            transcription factor) (HIP116)
          Length = 1009

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
 Frame = +1

Query: 55   NANSSEYPSGSGADHE-------------ASGNNHSGSFDCNICLEISKDTVISMCGHLF 195
            NA SS  PSG+    E             +SG++     +C ICL+     VI+ C H+F
Sbjct: 724  NAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDE----ECAICLDSLTVPVITHCAHVF 779

Query: 196  CWPCLHRWIETQSPRATCPVCKAAISRDKVIPL----YGRDSTDQRD 324
            C PC+ + I+ + P A CP+C+  I  D ++        RDS  + D
Sbjct: 780  CKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSD 826
>sp|Q00940|PEX10_PICAN Peroxisome assembly protein PER8 (Peroxin-10)
          Length = 295

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +1

Query: 136 CNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
           C +CL   KD     CGH+FCW C+  W++    R  CP+C+A +   +++PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVK---ERQECPLCRAKMRESQLLPL 294
>sp|Q9UUF0|PEX10_SCHPO Peroxisome assembly protein 10 (Peroxin-10)
          Length = 306

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = +1

Query: 124 GSFDCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
           G+  C++C+E       + CGH+FCW C++ W    S ++ CP+C+A  S  K+I L
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGW---TSKKSECPLCRAFSSPSKIILL 305
>sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 3 (Sucrose nonfermenting
           protein 2-like 3) (RUSH-1)
          Length = 1005

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
 Frame = +1

Query: 55  NANSSEYPSGSGADHE-------------ASGNNHSGSFDCNICLEISKDTVISMCGHLF 195
           N  SS  PSG+    E             +SG++     +C ICL+     VI+ C H+F
Sbjct: 721 NTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDE----ECAICLDSLTVPVITHCAHVF 776

Query: 196 CWPCLHRWIETQSPRATCPVCKAAISRDKVI 288
           C PC+ + I+ + P A CP+C+  I  D ++
Sbjct: 777 CKPCICQCIQNEQPHAKCPLCRNDIHGDNLL 807
>sp|Q9SYU4|PEX10_ARATH Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p)
           (PER8)
          Length = 381

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 41/87 (47%)
 Frame = +1

Query: 46  ESANANSSEYPSGSGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRWIE 225
           E  N  +SE   G+ +  +++     G   C +CL   +    + CGH+FCW C+  W  
Sbjct: 299 EEGNLITSEAEKGNWSTSDSTSTEAVGK--CTLCLSTRQHPTATPCGHVFCWSCIMEWC- 355

Query: 226 TQSPRATCPVCKAAISRDKVIPLYGRD 306
             + +  CP+C+   +   ++ LY  D
Sbjct: 356 --NEKQECPLCRTPNTHSSLVCLYHSD 380
>sp|Q9D9R0|RN125_MOUSE RING finger protein 125
          Length = 233

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +1

Query: 49  SANANSSEYPSGSGADHEASGNNHSG--SFDCNICLEISKDTVISMCGHLFCWPCLHRWI 222
           S++++ S   S +    E SG++     SFDC++CLE+    V + CGH+FC  C+   I
Sbjct: 6   SSDSSKSAPASATPRTLERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSI 65

Query: 223 ETQSPRATCPVCKAAISRDKV 285
           +  + + TCP C+A +  + V
Sbjct: 66  KNNN-KWTCPYCRAYLPSEGV 85
>sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 3 (Sucrose nonfermenting
           protein 2-like 3) (TNF-response element binding protein)
           (P113)
          Length = 1003

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 133 DCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVI 288
           +C ICL+     VI+ C H+FC PC+ + I ++ P A CP+C+  I  D ++
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLL 804
>sp|Q9HCM9|TRI39_HUMAN Tripartite motif protein 39 (RING finger protein 23)
           (Testis-abundant finger protein)
          Length = 518

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 24/59 (40%), Positives = 30/59 (50%)
 Frame = +1

Query: 85  SGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCK 261
           S A   A+  N      C++CLE  K+ VI  CGH FC  C+ RW E       CPVC+
Sbjct: 12  SAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>sp|O60683|PEX10_HUMAN Peroxisome assembly protein 10 (Peroxin-10) (RING finger protein
           69)
          Length = 326

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 136 CNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
           C +CLE  +    + CGHLFCW C+  W    S +A CP+C+      K+I L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,260,676
Number of Sequences: 369166
Number of extensions: 1446743
Number of successful extensions: 4811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4757
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)