Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L24
(730 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09463|RNF5_CAEEL RING finger protein 5 134 2e-31
sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated act... 55 2e-07
sp|Q00940|PEX10_PICAN Peroxisome assembly protein PER8 (Per... 53 7e-07
sp|Q9UUF0|PEX10_SCHPO Peroxisome assembly protein 10 (Perox... 53 7e-07
sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated act... 53 9e-07
sp|Q9SYU4|PEX10_ARATH Peroxisome assembly protein 10 (Perox... 52 1e-06
sp|Q9D9R0|RN125_MOUSE RING finger protein 125 51 3e-06
sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated act... 51 3e-06
sp|Q9HCM9|TRI39_HUMAN Tripartite motif protein 39 (RING fin... 51 3e-06
sp|O60683|PEX10_HUMAN Peroxisome assembly protein 10 (Perox... 51 3e-06
>sp|Q09463|RNF5_CAEEL RING finger protein 5
Length = 235
Score = 134 bits (338), Expect = 2e-31
Identities = 86/242 (35%), Positives = 110/242 (45%), Gaps = 44/242 (18%)
Frame = +1
Query: 40 MAESANANSSEYPSGSGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRW 219
MA A S E S S D A F+CNICL+ +KD V+S+CGHLFCWPCL +W
Sbjct: 1 MASETKAPSEEPTSSSNKDESAR-------FECNICLDAAKDAVVSLCGHLFCWPCLSQW 53
Query: 220 IETQSPRATCPVCKAAISRDKVIPLYGRDSTDQRDPRDKIPPRPQGQRTESERXXXXXXX 399
++T+ CPVCK+AI +KV+P+YGR D DPR K+PPRP+GQR+E
Sbjct: 54 LDTRPNNQVCPVCKSAIDGNKVVPIYGRGG-DSSDPRKKVPPRPKGQRSEPPPQSFAGFN 112
Query: 400 XXXXXXIFRPGVDTGVNMSFGIGA----FPL--------GLFATTFNFS----------- 510
+ G V+ SFGIG FPL G+F +F S
Sbjct: 113 WGGDGGMMGGG-GPNVHFSFGIGTVNGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGAAA 171
Query: 511 -----GGNNPQNDPNFRETDAYS----------------IQQSELLSKVFLVIAGCCFLW 627
GG N ND T ++ Q+ E LS +F I W
Sbjct: 172 AGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFW 231
Query: 628 LL 633
LL
Sbjct: 232 LL 233
>sp|Q14527|SMRA3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (DNA binding protein/plasminogen
activator inhibitor-1 regulator) (Helicase-like
transcription factor) (HIP116)
Length = 1009
Score = 55.1 bits (131), Expect = 2e-07
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Frame = +1
Query: 55 NANSSEYPSGSGADHE-------------ASGNNHSGSFDCNICLEISKDTVISMCGHLF 195
NA SS PSG+ E +SG++ +C ICL+ VI+ C H+F
Sbjct: 724 NAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDE----ECAICLDSLTVPVITHCAHVF 779
Query: 196 CWPCLHRWIETQSPRATCPVCKAAISRDKVIPL----YGRDSTDQRD 324
C PC+ + I+ + P A CP+C+ I D ++ RDS + D
Sbjct: 780 CKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSD 826
>sp|Q00940|PEX10_PICAN Peroxisome assembly protein PER8 (Peroxin-10)
Length = 295
Score = 53.1 bits (126), Expect = 7e-07
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 136 CNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
C +CL KD CGH+FCW C+ W++ R CP+C+A + +++PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVK---ERQECPLCRAKMRESQLLPL 294
>sp|Q9UUF0|PEX10_SCHPO Peroxisome assembly protein 10 (Peroxin-10)
Length = 306
Score = 53.1 bits (126), Expect = 7e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 124 GSFDCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
G+ C++C+E + CGH+FCW C++ W S ++ CP+C+A S K+I L
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGW---TSKKSECPLCRAFSSPSKIILL 305
>sp|Q95216|SMRA3_RABIT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (RUSH-1)
Length = 1005
Score = 52.8 bits (125), Expect = 9e-07
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Frame = +1
Query: 55 NANSSEYPSGSGADHE-------------ASGNNHSGSFDCNICLEISKDTVISMCGHLF 195
N SS PSG+ E +SG++ +C ICL+ VI+ C H+F
Sbjct: 721 NTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDE----ECAICLDSLTVPVITHCAHVF 776
Query: 196 CWPCLHRWIETQSPRATCPVCKAAISRDKVI 288
C PC+ + I+ + P A CP+C+ I D ++
Sbjct: 777 CKPCICQCIQNEQPHAKCPLCRNDIHGDNLL 807
>sp|Q9SYU4|PEX10_ARATH Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p)
(PER8)
Length = 381
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = +1
Query: 46 ESANANSSEYPSGSGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRWIE 225
E N +SE G+ + +++ G C +CL + + CGH+FCW C+ W
Sbjct: 299 EEGNLITSEAEKGNWSTSDSTSTEAVGK--CTLCLSTRQHPTATPCGHVFCWSCIMEWC- 355
Query: 226 TQSPRATCPVCKAAISRDKVIPLYGRD 306
+ + CP+C+ + ++ LY D
Sbjct: 356 --NEKQECPLCRTPNTHSSLVCLYHSD 380
>sp|Q9D9R0|RN125_MOUSE RING finger protein 125
Length = 233
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 49 SANANSSEYPSGSGADHEASGNNHSG--SFDCNICLEISKDTVISMCGHLFCWPCLHRWI 222
S++++ S S + E SG++ SFDC++CLE+ V + CGH+FC C+ I
Sbjct: 6 SSDSSKSAPASATPRTLERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSI 65
Query: 223 ETQSPRATCPVCKAAISRDKV 285
+ + + TCP C+A + + V
Sbjct: 66 KNNN-KWTCPYCRAYLPSEGV 85
>sp|Q6PCN7|SMRA3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 3 (Sucrose nonfermenting
protein 2-like 3) (TNF-response element binding protein)
(P113)
Length = 1003
Score = 51.2 bits (121), Expect = 3e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1
Query: 133 DCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVI 288
+C ICL+ VI+ C H+FC PC+ + I ++ P A CP+C+ I D ++
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLL 804
>sp|Q9HCM9|TRI39_HUMAN Tripartite motif protein 39 (RING finger protein 23)
(Testis-abundant finger protein)
Length = 518
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/59 (40%), Positives = 30/59 (50%)
Frame = +1
Query: 85 SGADHEASGNNHSGSFDCNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCK 261
S A A+ N C++CLE K+ VI CGH FC C+ RW E CPVC+
Sbjct: 12 SAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>sp|O60683|PEX10_HUMAN Peroxisome assembly protein 10 (Peroxin-10) (RING finger protein
69)
Length = 326
Score = 51.2 bits (121), Expect = 3e-06
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +1
Query: 136 CNICLEISKDTVISMCGHLFCWPCLHRWIETQSPRATCPVCKAAISRDKVIPL 294
C +CLE + + CGHLFCW C+ W S +A CP+C+ K+I L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,260,676
Number of Sequences: 369166
Number of extensions: 1446743
Number of successful extensions: 4811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4757
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)