Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02083
(629 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9KNF3|MALT_VIBCH HTH-type transcriptional regulator mal... 31 3.0
sp|Q42858|PAL2_IPOBA Phenylalanine ammonia-lyase 30 3.9
>sp|Q9KNF3|MALT_VIBCH HTH-type transcriptional regulator malT (ATP-dependent
transcriptional activator malT)
Length = 902
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 554 QEHRTSVRTRSPSTYRPDKACNQ-SMIKWTN 465
+E+ T +R S+ RPDKACN S ++W N
Sbjct: 666 KENSTEIRQWLQSSTRPDKACNHFSQLQWRN 696
>sp|Q42858|PAL2_IPOBA Phenylalanine ammonia-lyase
Length = 708
Score = 30.4 bits (67), Expect = 3.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 444 ISPALVNVDHKHNIVTETRQSMAGWHGDDECKEIINERVEGL*KSINQSN 295
+ AL N +H+ N+ T Q +A + +DE K ++ + VEG +I N
Sbjct: 590 VDHALQNGEHEKNVSTSIFQKIAAF--EDELKAVLPKEVEGARSAIENGN 637
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,289,722
Number of Sequences: 369166
Number of extensions: 1096532
Number of successful extensions: 2706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)