Planaria EST Database


DrC_02083

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02083
         (629 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KNF3|MALT_VIBCH  HTH-type transcriptional regulator mal...    31   3.0  
sp|Q42858|PAL2_IPOBA  Phenylalanine ammonia-lyase                  30   3.9  
>sp|Q9KNF3|MALT_VIBCH HTH-type transcriptional regulator malT (ATP-dependent
           transcriptional activator malT)
          Length = 902

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 554 QEHRTSVRTRSPSTYRPDKACNQ-SMIKWTN 465
           +E+ T +R    S+ RPDKACN  S ++W N
Sbjct: 666 KENSTEIRQWLQSSTRPDKACNHFSQLQWRN 696
>sp|Q42858|PAL2_IPOBA Phenylalanine ammonia-lyase
          Length = 708

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 444 ISPALVNVDHKHNIVTETRQSMAGWHGDDECKEIINERVEGL*KSINQSN 295
           +  AL N +H+ N+ T   Q +A +  +DE K ++ + VEG   +I   N
Sbjct: 590 VDHALQNGEHEKNVSTSIFQKIAAF--EDELKAVLPKEVEGARSAIENGN 637
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,289,722
Number of Sequences: 369166
Number of extensions: 1096532
Number of successful extensions: 2706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)