Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02080
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57220|PRIA_BUCAI Primosomal protein N' (ATP-dependent h... 31 5.3
sp|Q47318|IUCC_ECOLI Aerobactin siderophore biosynthesis pr... 30 6.9
sp|P07149|FAS1_YEAST Fatty acid synthase beta subunit [Incl... 30 9.0
sp|P54418|PPCK_BACSU Phosphoenolpyruvate carboxykinase [ATP... 30 9.0
sp|O04887|PME2_CITSI Pectinesterase-2 precursor (Pectin met... 30 9.0
>sp|P57220|PRIA_BUCAI Primosomal protein N' (ATP-dependent helicase priA) (Replication
factor Y)
Length = 726
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 404 IMKLEIHGYREQLLILKNSPVSELCKENLNFIIN 505
I+ E+ Y +ILK + ELCK NLN+ I+
Sbjct: 149 ILSTELKKYNISKIILKKLEIQELCKVNLNYKIS 182
>sp|Q47318|IUCC_ECOLI Aerobactin siderophore biosynthesis protein iucC
Length = 580
Score = 30.4 bits (67), Expect = 6.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 337 YAGTLEEFFEITW---KNRHLLPLVDNEVGDTWIQGTASDPKKFARFRAMQRE 486
YA F + W K H++ DNE+ + A DP++FARF + +E
Sbjct: 156 YAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQE 208
>sp|P07149|FAS1_YEAST Fatty acid synthase beta subunit [Includes:
3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase ;
Enoyl-[acyl-carrier-protein] reductase [NADH] ;
[Acyl-carrier-protein] acetyltransferase ;
[Acyl-carrier-protein] malonyltransferase ; S-acyl fatty
acid synthase thioesterase ]
Length = 2051
Score = 30.0 bits (66), Expect = 9.0
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 23/78 (29%)
Frame = +1
Query: 265 PPQSIQEVLNAYEVVRGRYINAH-----------------IYAGTLEEFFEI------TW 375
P ++I++V NAY R +++NA + L+ FEI W
Sbjct: 976 PDEAIEKVFNAYPAAREQFLNAQDIDHFLSMCQNPMQKPVPFVPVLDRRFEIFFKKDSLW 1035
Query: 376 KNRHLLPLVDNEVGDTWI 429
++ HL +VD +V T I
Sbjct: 1036 QSEHLEAVVDQDVQRTCI 1053
>sp|P54418|PPCK_BACSU Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase)
(Phosphoenolpyruvate carboxylase) (PEPCK)
Length = 527
Score = 30.0 bits (66), Expect = 9.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 705 NILGPNHTLTLSILEEFKKMENFDALKFKKNFKNSIHPDFVLQ 833
+IL P +T T EE+K+ + A +FK+NFK H D + Q
Sbjct: 481 HILQPENTWTNK--EEYKEKAVYLANEFKENFKKFAHTDAIAQ 521
>sp|O04887|PME2_CITSI Pectinesterase-2 precursor (Pectin methylesterase) (PE)
Length = 510
Score = 30.0 bits (66), Expect = 9.0
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 253 DNTGPPQSIQEVLNAYEVVRGRYINAHIYAGTLEEFFEITWKNRHLLPLVDNEVGDTWIQ 432
D +G ++IQE + A G +I AGT E E+ KN + V + +G T I
Sbjct: 208 DGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKN---IMFVGDGIGKTIIT 264
Query: 433 GTAS 444
G+ S
Sbjct: 265 GSKS 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,027,607
Number of Sequences: 369166
Number of extensions: 2072360
Number of successful extensions: 4687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4686
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)