Planaria EST Database


DrC_02077

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02077
         (862 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W596|FUTSC_DROME  Microtubule-associated protein futsch       71   3e-12
sp|P34926|MAP1A_RAT  Microtubule-associated protein 1A (MAP ...    54   4e-07
sp|P78559|MAP1A_HUMAN  Microtubule-associated protein 1A (MA...    54   7e-07
sp|P46821|MAP1B_HUMAN  Microtubule-associated protein 1B (MA...    49   2e-05
sp|P15205|MAP1B_RAT  Microtubule-associated protein 1B (MAP ...    49   2e-05
sp|P14873|MAP1B_MOUSE  Microtubule-associated protein 1B (MA...    49   2e-05
sp|P51125|ICAL_MOUSE  Calpastatin (Calpain inhibitor)              41   0.004
sp|Q9HGP4|YK82_SCHPO  Hypothetical bromodomain protein C631.02     37   0.054
sp|O42970|YB95_SCHPO  Hypothetical serine-rich protein C1E8....    37   0.054
sp|P27321|ICAL_RAT  Calpastatin (Calpain inhibitor)                37   0.071
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
          Length = 5412

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 41/119 (34%), Positives = 65/119 (54%)
 Frame = +3

Query: 504  KCSAFYMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSEVLDMILAAKRKW 683
            K +  Y+++ Y+P  H+GN     V   FF RVRAR Y+  G E S +V D +L AK+ W
Sbjct: 5296 KPAPVYVDLTYVP--HNGNSYYAHVD--FFKRVRARYYVFSGTEPSRQVYDALLEAKQTW 5351

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAAVEHCSVSLGVDNNMPCIA 860
              ED E+EV + P   T+ L  W  ++ + L++  I +  +   C+++L  D+   C A
Sbjct: 5352 --EDKELEVTIIPTYDTDVLGYWVAENEELLAKHRIDLSPSASRCTINL-QDHETSCSA 5407
>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1 light
            chain LC2]
          Length = 2774

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
 Frame = +3

Query: 519  YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGL-----EHSSEVLDMILAAKRKW 683
            Y+++AYIP    G        + FF RVRA  Y++ G      E S  VLD +L  K +W
Sbjct: 2663 YVDLAYIPNHCSGKT----ADQDFFRRVRASYYVVSGNDPANGEPSRAVLDALLEGKAQW 2718

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
             E    ++V L P   TE  ++W  Q  +Q  QLN+ + A+
Sbjct: 2719 GEN---LQVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLAS 2756
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
            protein p80) [Contains: MAP1 light chain LC2]
          Length = 2805

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
 Frame = +3

Query: 519  YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGL-----EHSSEVLDMILAAKRKW 683
            Y+++AYIP    G          FF RVRA  Y++ G      E S  VLD +L  K +W
Sbjct: 2692 YVDLAYIPNHWSGKT----ADLDFFRRVRASYYVVSGNDPANGEPSRAVLDALLEGKAQW 2747

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
             E + +++V L P   TE  ++W  Q  +Q  QLN+ + A+
Sbjct: 2748 GE-NLQVKVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLAS 2787
>sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1 light
            chain LC1]
          Length = 2468

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
 Frame = +3

Query: 519  YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
            Y+++ YIP     + N   V   FF RVR+  Y++ G + ++E     VLD +L  K +W
Sbjct: 2357 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2412

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
                + ++V L P   +E +++W  +  ++   LNI + A+
Sbjct: 2413 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2450
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains: MAP1
            light chain LC1]
          Length = 2459

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
 Frame = +3

Query: 519  YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
            Y+++ YIP     + N   V   FF RVR+  Y++ G + ++E     VLD +L  K +W
Sbjct: 2348 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2403

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
                + ++V L P   +E +++W  +  ++   LNI + A+
Sbjct: 2404 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2441
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
            [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
 Frame = +3

Query: 519  YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
            Y+++ YIP     + N   V   FF RVR+  Y++ G + ++E     VLD +L  K +W
Sbjct: 2353 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2408

Query: 684  SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
                + ++V L P   +E +++W  +  ++   LNI + A+
Sbjct: 2409 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2446
>sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor)
          Length = 788

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
 Frame = +3

Query: 12   GTRRESKESDESV---------HIPSPSDNFD-DDRINMSCKPDHDNLNGSVNGN--HHY 155
            GT ++ KE D+++           P P +N   DD++    KP+H    G  +      Y
Sbjct: 637  GTEQKDKELDDALDELSDSLGQRPPDPDENKPLDDKVKEKIKPEHSEKLGERDDTIPPEY 696

Query: 156  DHFSESDSNHATYWGEPLGLPMPTLLSSKSSTKP---------ASEKISSHPSTKLKSAN 308
             H  ++D           G   P    +K + KP          SE + S PST   S N
Sbjct: 697  RHLLDND-----------GKDKPEKPPTKKTEKPDQDRDPIDALSEDLDSCPSTTETSKN 745

Query: 309  ATSAKLNGTSSNPVSAVTHKAAESSK---SVSSPR 404
                K   TSS+  S    K  +SSK    VS P+
Sbjct: 746  TAKGKSKKTSSSKASKDGEKTKDSSKKTEEVSKPK 780
>sp|Q9HGP4|YK82_SCHPO Hypothetical bromodomain protein C631.02
          Length = 727

 Score = 37.4 bits (85), Expect = 0.054
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
 Frame = +3

Query: 12  GTRRESKESDESVHIPSPSDNFDDDRINMSCKPDHDNLNGSVNGNHHY------DHFSES 173
           G  +E+  S + +H   P  NFDD+  +    P   N+    +   H       +  SES
Sbjct: 76  GDNQETDYSSQYLHPTPPYTNFDDESPSSPTHPSVSNITVDGDSKKHSLQLQEEEKSSES 135

Query: 174 DSNHA------TYWGEPLGLPMPTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGT 335
             +H           + L     + +S  S    AS  +++  S K+KS  + SA     
Sbjct: 136 LDSHTHPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASNKIKSEASESA----- 190

Query: 336 SSNPVSAVTHKAAESSKSVSSPRN 407
           S + + A+   AA SSK  SSP +
Sbjct: 191 SPSALQALDSTAAGSSKEHSSPHD 214
>sp|O42970|YB95_SCHPO Hypothetical serine-rich protein C1E8.05 in chromosome II precursor
          Length = 317

 Score = 37.4 bits (85), Expect = 0.054
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +3

Query: 222 PTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGTSSNPVSAVTHKAAESSKSVSSP 401
           P+  SS SS+ P+S    S  S+K  S++++S+K + +SS+  S  +  ++ SSKS +SP
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSS-SKSSSSSSSSSKSSASP 212
>sp|P27321|ICAL_RAT Calpastatin (Calpain inhibitor)
          Length = 654

 Score = 37.0 bits (84), Expect = 0.071
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
 Frame = +3

Query: 12  GTRRESKESDESV---------HIPSPSDNFD-DDRINMSCKPDHDNLNGSVNGN--HHY 155
           GT R  KE D+++           P P +N   DD++    K +H    G  +      Y
Sbjct: 505 GTERRDKELDDALDELSDSLGQRQPDPDENKPLDDKVKEKIKAEHSEKLGERDDTIPPEY 564

Query: 156 DHFSESDSNHATYWGEPLGLPMPTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGT 335
            H  ++D        +PL          +      SE + S P T   S N T  K   T
Sbjct: 565 RHLLDNDGKDKPE--KPLDKEHREAGQDQDPIDALSEDLDSCPPTTETSQNTTKEKGKKT 622

Query: 336 SSNPVSAVTHKAAESSK 386
           SS+  S    K  +SSK
Sbjct: 623 SSSKASKNEEKTKDSSK 639
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,625,108
Number of Sequences: 369166
Number of extensions: 1681851
Number of successful extensions: 5781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5757
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)