Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_J04
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 71 3e-12
sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP ... 54 4e-07
sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MA... 54 7e-07
sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MA... 49 2e-05
sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP ... 49 2e-05
sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MA... 49 2e-05
sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor) 41 0.004
sp|Q9HGP4|YK82_SCHPO Hypothetical bromodomain protein C631.02 37 0.054
sp|O42970|YB95_SCHPO Hypothetical serine-rich protein C1E8.... 37 0.054
sp|P27321|ICAL_RAT Calpastatin (Calpain inhibitor) 37 0.071
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 71.2 bits (173), Expect = 3e-12
Identities = 41/119 (34%), Positives = 65/119 (54%)
Frame = +3
Query: 504 KCSAFYMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSEVLDMILAAKRKW 683
K + Y+++ Y+P H+GN V FF RVRAR Y+ G E S +V D +L AK+ W
Sbjct: 5296 KPAPVYVDLTYVP--HNGNSYYAHVD--FFKRVRARYYVFSGTEPSRQVYDALLEAKQTW 5351
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAAVEHCSVSLGVDNNMPCIA 860
ED E+EV + P T+ L W ++ + L++ I + + C+++L D+ C A
Sbjct: 5352 --EDKELEVTIIPTYDTDVLGYWVAENEELLAKHRIDLSPSASRCTINL-QDHETSCSA 5407
>sp|P34926|MAP1A_RAT Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1 light
chain LC2]
Length = 2774
Score = 54.3 bits (129), Expect = 4e-07
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = +3
Query: 519 YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGL-----EHSSEVLDMILAAKRKW 683
Y+++AYIP G + FF RVRA Y++ G E S VLD +L K +W
Sbjct: 2663 YVDLAYIPNHCSGKT----ADQDFFRRVRASYYVVSGNDPANGEPSRAVLDALLEGKAQW 2718
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
E ++V L P TE ++W Q +Q QLN+ + A+
Sbjct: 2719 GEN---LQVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLAS 2756
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
protein p80) [Contains: MAP1 light chain LC2]
Length = 2805
Score = 53.5 bits (127), Expect = 7e-07
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Frame = +3
Query: 519 YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGL-----EHSSEVLDMILAAKRKW 683
Y+++AYIP G FF RVRA Y++ G E S VLD +L K +W
Sbjct: 2692 YVDLAYIPNHWSGKT----ADLDFFRRVRASYYVVSGNDPANGEPSRAVLDALLEGKAQW 2747
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
E + +++V L P TE ++W Q +Q QLN+ + A+
Sbjct: 2748 GE-NLQVKVTLIPTHDTEVTREWYQQTHEQQQQLNVLVLAS 2787
>sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1 light
chain LC1]
Length = 2468
Score = 48.5 bits (114), Expect = 2e-05
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Frame = +3
Query: 519 YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
Y+++ YIP + N V FF RVR+ Y++ G + ++E VLD +L K +W
Sbjct: 2357 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2412
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
+ ++V L P +E +++W + ++ LNI + A+
Sbjct: 2413 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2450
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains: MAP1
light chain LC1]
Length = 2459
Score = 48.5 bits (114), Expect = 2e-05
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Frame = +3
Query: 519 YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
Y+++ YIP + N V FF RVR+ Y++ G + ++E VLD +L K +W
Sbjct: 2348 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2403
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
+ ++V L P +E +++W + ++ LNI + A+
Sbjct: 2404 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2441
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
[Contains: MAP1 light chain LC1]
Length = 2464
Score = 48.5 bits (114), Expect = 2e-05
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Frame = +3
Query: 519 YMEIAYIPVDHDGNVNPTRVSEAFFTRVRARQYILPGLEHSSE-----VLDMILAAKRKW 683
Y+++ YIP + N V FF RVR+ Y++ G + ++E VLD +L K +W
Sbjct: 2353 YLDLCYIP----NHSNSKNVDVEFFKRVRSSYYVVSGNDPAAEEPSRAVLDALLEGKAQW 2408
Query: 684 SEEDNEIEVRLTPIKMTETLKKWAGQHAQQLSQLNIKIGAA 806
+ ++V L P +E +++W + ++ LNI + A+
Sbjct: 2409 G---SNMQVTLIPTHDSEVMREWYQETHEKQQDLNIMVLAS 2446
>sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor)
Length = 788
Score = 41.2 bits (95), Expect = 0.004
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Frame = +3
Query: 12 GTRRESKESDESV---------HIPSPSDNFD-DDRINMSCKPDHDNLNGSVNGN--HHY 155
GT ++ KE D+++ P P +N DD++ KP+H G + Y
Sbjct: 637 GTEQKDKELDDALDELSDSLGQRPPDPDENKPLDDKVKEKIKPEHSEKLGERDDTIPPEY 696
Query: 156 DHFSESDSNHATYWGEPLGLPMPTLLSSKSSTKP---------ASEKISSHPSTKLKSAN 308
H ++D G P +K + KP SE + S PST S N
Sbjct: 697 RHLLDND-----------GKDKPEKPPTKKTEKPDQDRDPIDALSEDLDSCPSTTETSKN 745
Query: 309 ATSAKLNGTSSNPVSAVTHKAAESSK---SVSSPR 404
K TSS+ S K +SSK VS P+
Sbjct: 746 TAKGKSKKTSSSKASKDGEKTKDSSKKTEEVSKPK 780
>sp|Q9HGP4|YK82_SCHPO Hypothetical bromodomain protein C631.02
Length = 727
Score = 37.4 bits (85), Expect = 0.054
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Frame = +3
Query: 12 GTRRESKESDESVHIPSPSDNFDDDRINMSCKPDHDNLNGSVNGNHHY------DHFSES 173
G +E+ S + +H P NFDD+ + P N+ + H + SES
Sbjct: 76 GDNQETDYSSQYLHPTPPYTNFDDESPSSPTHPSVSNITVDGDSKKHSLQLQEEEKSSES 135
Query: 174 DSNHA------TYWGEPLGLPMPTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGT 335
+H + L + +S S AS +++ S K+KS + SA
Sbjct: 136 LDSHTHPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASNKIKSEASESA----- 190
Query: 336 SSNPVSAVTHKAAESSKSVSSPRN 407
S + + A+ AA SSK SSP +
Sbjct: 191 SPSALQALDSTAAGSSKEHSSPHD 214
>sp|O42970|YB95_SCHPO Hypothetical serine-rich protein C1E8.05 in chromosome II precursor
Length = 317
Score = 37.4 bits (85), Expect = 0.054
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 222 PTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGTSSNPVSAVTHKAAESSKSVSSP 401
P+ SS SS+ P+S S S+K S++++S+K + +SS+ S + ++ SSKS +SP
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSS-SKSSSSSSSSSKSSASP 212
>sp|P27321|ICAL_RAT Calpastatin (Calpain inhibitor)
Length = 654
Score = 37.0 bits (84), Expect = 0.071
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Frame = +3
Query: 12 GTRRESKESDESV---------HIPSPSDNFD-DDRINMSCKPDHDNLNGSVNGN--HHY 155
GT R KE D+++ P P +N DD++ K +H G + Y
Sbjct: 505 GTERRDKELDDALDELSDSLGQRQPDPDENKPLDDKVKEKIKAEHSEKLGERDDTIPPEY 564
Query: 156 DHFSESDSNHATYWGEPLGLPMPTLLSSKSSTKPASEKISSHPSTKLKSANATSAKLNGT 335
H ++D +PL + SE + S P T S N T K T
Sbjct: 565 RHLLDNDGKDKPE--KPLDKEHREAGQDQDPIDALSEDLDSCPPTTETSQNTTKEKGKKT 622
Query: 336 SSNPVSAVTHKAAESSK 386
SS+ S K +SSK
Sbjct: 623 SSSKASKNEEKTKDSSK 639
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,625,108
Number of Sequences: 369166
Number of extensions: 1681851
Number of successful extensions: 5781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5757
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)