Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02076
(159 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30532|ACHA5_HUMAN Neuronal acetylcholine receptor prote... 72 4e-13
sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor protein... 72 4e-13
sp|Q5IS51|ACHA5_PANTR Neuronal acetylcholine receptor prote... 72 4e-13
sp|P26152|ACHA5_CHICK Neuronal acetylcholine receptor prote... 71 9e-13
sp|P43679|ACHB3_CHICK Neuronal acetylcholine receptor prote... 70 1e-12
sp|Q8BMN3|ACHB3_MOUSE Neuronal acetylcholine receptor prote... 70 2e-12
sp|P12391|ACHB3_RAT Neuronal acetylcholine receptor protein... 70 2e-12
sp|Q5IS75|ACHB3_PANTR Neuronal acetylcholine receptor prote... 70 2e-12
sp|P05377|ACHAB_XENLA Acetylcholine receptor protein, alpha... 67 1e-11
sp|P14143|ACHA_NAJNA Acetylcholine receptor protein, alpha ... 66 3e-11
>sp|P30532|ACHA5_HUMAN Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
Length = 468
Score = 72.0 bits (175), Expect = 4e-13
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
T+FPFD Q+CSMKFGSWTYDG+Q+DII DVD ++ +GEW++++
Sbjct: 175 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDKRDFFDNGEWEIVS 222
>sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
Length = 452
Score = 72.0 bits (175), Expect = 4e-13
Identities = 28/48 (58%), Positives = 40/48 (83%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
T+FPFD Q+CSMKFGSWTYDG+Q+DII DVD +++ +GEW++++
Sbjct: 160 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDRTDFFDNGEWEIMS 207
>sp|Q5IS51|ACHA5_PANTR Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
Length = 468
Score = 72.0 bits (175), Expect = 4e-13
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
T+FPFD Q+CSMKFGSWTYDG+Q+DII DVD ++ +GEW++++
Sbjct: 175 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDKRDFFDNGEWEIVS 222
>sp|P26152|ACHA5_CHICK Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
Length = 454
Score = 70.9 bits (172), Expect = 9e-13
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
T+FPFD Q+CSMKFGSWTYDG+Q+DII +VD ++ +GEW+++T
Sbjct: 161 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDYEVDKRDFFDNGEWEIVT 208
>sp|P43679|ACHB3_CHICK Neuronal acetylcholine receptor protein, beta-3 subunit precursor
Length = 455
Score = 70.5 bits (171), Expect = 1e-12
Identities = 26/50 (52%), Positives = 40/50 (80%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
T+FPFD Q+CSMKFGSWTYDG+ +D+I ++VDT ++ +GEW+++ +
Sbjct: 155 TFFPFDRQNCSMKFGSWTYDGSMVDLILVDENVDTKDFFDNGEWEILNAK 204
>sp|Q8BMN3|ACHB3_MOUSE Neuronal acetylcholine receptor protein, beta-3 subunit precursor
Length = 464
Score = 70.1 bits (170), Expect = 2e-12
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
T+FPFD Q+CSMKFGSWTYDGT +D+I ++VD ++ +GEW+++ +
Sbjct: 164 TFFPFDKQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 213
>sp|P12391|ACHB3_RAT Neuronal acetylcholine receptor protein, beta-3 subunit precursor
Length = 464
Score = 69.7 bits (169), Expect = 2e-12
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
T+FPFD Q+CSMKFGSWTYDGT +D+I ++VD ++ +GEW+++ +
Sbjct: 164 TFFPFDRQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 213
>sp|Q5IS75|ACHB3_PANTR Neuronal acetylcholine receptor protein, beta-3 subunit precursor
sp|Q05901|ACHB3_HUMAN Neuronal acetylcholine receptor protein, beta-3 subunit precursor
Length = 458
Score = 69.7 bits (169), Expect = 2e-12
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
T+FPFD Q+CSMKFGSWTYDGT +D+I ++VD ++ +GEW+++ +
Sbjct: 158 TFFPFDRQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 207
>sp|P05377|ACHAB_XENLA Acetylcholine receptor protein, alpha-1-B subunit precursor
Length = 457
Score = 67.0 bits (162), Expect = 1e-11
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQL 144
TYFPFD Q+CSMKFG+WTYDG+ L I +D D SN++ SGEW +
Sbjct: 153 TYFPFDQQNCSMKFGTWTYDGSLLVINPERDRPDLSNFMASGEWMM 198
>sp|P14143|ACHA_NAJNA Acetylcholine receptor protein, alpha subunit
Length = 104
Score = 65.9 bits (159), Expect = 3e-11
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +1
Query: 7 TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQL 144
TYFPFD+Q+CSMK G+WTYDGT + I D SNY+ SGEW L
Sbjct: 15 TYFPFDEQNCSMKLGTWTYDGTVVAIYPEGPRPDLSNYMQSGEWTL 60
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,470,146
Number of Sequences: 369166
Number of extensions: 277151
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)