Planaria EST Database


DrC_02076

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02076
         (159 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30532|ACHA5_HUMAN  Neuronal acetylcholine receptor prote...    72   4e-13
sp|P20420|ACHA5_RAT  Neuronal acetylcholine receptor protein...    72   4e-13
sp|Q5IS51|ACHA5_PANTR  Neuronal acetylcholine receptor prote...    72   4e-13
sp|P26152|ACHA5_CHICK  Neuronal acetylcholine receptor prote...    71   9e-13
sp|P43679|ACHB3_CHICK  Neuronal acetylcholine receptor prote...    70   1e-12
sp|Q8BMN3|ACHB3_MOUSE  Neuronal acetylcholine receptor prote...    70   2e-12
sp|P12391|ACHB3_RAT  Neuronal acetylcholine receptor protein...    70   2e-12
sp|Q5IS75|ACHB3_PANTR  Neuronal acetylcholine receptor prote...    70   2e-12
sp|P05377|ACHAB_XENLA  Acetylcholine receptor protein, alpha...    67   1e-11
sp|P14143|ACHA_NAJNA  Acetylcholine receptor protein, alpha ...    66   3e-11
>sp|P30532|ACHA5_HUMAN Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
          Length = 468

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
           T+FPFD Q+CSMKFGSWTYDG+Q+DII    DVD  ++  +GEW++++
Sbjct: 175 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDKRDFFDNGEWEIVS 222
>sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
          Length = 452

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 28/48 (58%), Positives = 40/48 (83%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
           T+FPFD Q+CSMKFGSWTYDG+Q+DII    DVD +++  +GEW++++
Sbjct: 160 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDRTDFFDNGEWEIMS 207
>sp|Q5IS51|ACHA5_PANTR Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
          Length = 468

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
           T+FPFD Q+CSMKFGSWTYDG+Q+DII    DVD  ++  +GEW++++
Sbjct: 175 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDQDVDKRDFFDNGEWEIVS 222
>sp|P26152|ACHA5_CHICK Neuronal acetylcholine receptor protein, alpha-5 subunit precursor
          Length = 454

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLIT 150
           T+FPFD Q+CSMKFGSWTYDG+Q+DII    +VD  ++  +GEW+++T
Sbjct: 161 TFFPFDLQNCSMKFGSWTYDGSQVDIILEDYEVDKRDFFDNGEWEIVT 208
>sp|P43679|ACHB3_CHICK Neuronal acetylcholine receptor protein, beta-3 subunit precursor
          Length = 455

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 26/50 (52%), Positives = 40/50 (80%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
           T+FPFD Q+CSMKFGSWTYDG+ +D+I   ++VDT ++  +GEW+++  +
Sbjct: 155 TFFPFDRQNCSMKFGSWTYDGSMVDLILVDENVDTKDFFDNGEWEILNAK 204
>sp|Q8BMN3|ACHB3_MOUSE Neuronal acetylcholine receptor protein, beta-3 subunit precursor
          Length = 464

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 26/50 (52%), Positives = 39/50 (78%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
           T+FPFD Q+CSMKFGSWTYDGT +D+I   ++VD  ++  +GEW+++  +
Sbjct: 164 TFFPFDKQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 213
>sp|P12391|ACHB3_RAT Neuronal acetylcholine receptor protein, beta-3 subunit precursor
          Length = 464

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 26/50 (52%), Positives = 39/50 (78%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
           T+FPFD Q+CSMKFGSWTYDGT +D+I   ++VD  ++  +GEW+++  +
Sbjct: 164 TFFPFDRQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 213
>sp|Q5IS75|ACHB3_PANTR Neuronal acetylcholine receptor protein, beta-3 subunit precursor
 sp|Q05901|ACHB3_HUMAN Neuronal acetylcholine receptor protein, beta-3 subunit precursor
          Length = 458

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 26/50 (52%), Positives = 39/50 (78%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQLITVR 156
           T+FPFD Q+CSMKFGSWTYDGT +D+I   ++VD  ++  +GEW+++  +
Sbjct: 158 TFFPFDRQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAK 207
>sp|P05377|ACHAB_XENLA Acetylcholine receptor protein, alpha-1-B subunit precursor
          Length = 457

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQL 144
           TYFPFD Q+CSMKFG+WTYDG+ L I   +D  D SN++ SGEW +
Sbjct: 153 TYFPFDQQNCSMKFGTWTYDGSLLVINPERDRPDLSNFMASGEWMM 198
>sp|P14143|ACHA_NAJNA Acetylcholine receptor protein, alpha subunit
          Length = 104

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +1

Query: 7   TYFPFDDQSCSMKFGSWTYDGTQLDIIKRQDDVDTSNYVHSGEWQL 144
           TYFPFD+Q+CSMK G+WTYDGT + I       D SNY+ SGEW L
Sbjct: 15  TYFPFDEQNCSMKLGTWTYDGTVVAIYPEGPRPDLSNYMQSGEWTL 60
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,470,146
Number of Sequences: 369166
Number of extensions: 277151
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)