Planaria EST Database


DrC_02075

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02075
         (397 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36168|YK76_YEAST  Hypothetical 137.5 kDa protein in MPL1...    33   0.27 
sp|P43043|YRR4_MYCCA  Hypothetical 31.5 kDa protein in rnpA-...    31   1.0  
sp|P27694|RFA1_HUMAN  Replication protein A 70 kDa DNA-bindi...    30   2.3  
sp|Q89AN8|DPO3A_BUCBP  DNA polymerase III alpha subunit            30   2.3  
sp|P57655|ILVC_BUCAI  Ketol-acid reductoisomerase (Acetohydr...    29   3.0  
sp|Q92G24|YD01_RICCN  Hypothetical UPF0235 protein RC1301          29   3.9  
sp|Q7VMC9|SYM_HAEDU  Methionyl-tRNA synthetase (Methionine--...    29   3.9  
sp|Q89B37|GYRB_BUCBP  DNA gyrase subunit B                         29   3.9  
sp|P41480|VP33_NPVAC  33 kDa early protein homolog (p33)           28   6.6  
sp|P18963|IRA1_YEAST  Inhibitory regulator protein IRA1            28   6.6  
>sp|P36168|YK76_YEAST Hypothetical 137.5 kDa protein in MPL1-PPC1 intergenic region
          Length = 1195

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 21/86 (24%), Positives = 41/86 (47%)
 Frame = +3

Query: 60  ESFVFHQNYLQLIIRNIFQRTKINPENASYLNYLWMILKCYQKDIMKFVKKNRMYLVLIF 239
           E+F     Y+QL+I NI+QR  +   N +  N L          +++++K +   L+  F
Sbjct: 477 ETFTPSPQYMQLVIDNIYQRAFVERNNGNLRNSL----------LIEYLKHSEAMLLPSF 526

Query: 240 RPKNNLESYRIRKRIQRTVLDGNTLN 317
               +L++  +   I++  +D N  N
Sbjct: 527 LESPDLQNVVLSYFIEKFGIDANGCN 552
>sp|P43043|YRR4_MYCCA Hypothetical 31.5 kDa protein in rnpA-licA intergenic region (ORF
           R4)
          Length = 265

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 60  ESFVFHQNYLQLIIRNIFQRTKINPENASYL---NYLWMILKCYQK---DIMKFVKKNRM 221
           ESF+FH+N+ + + +  F   K+N +   YL   + L + ++C Q+    I  F+ KN +
Sbjct: 118 ESFLFHKNWSKDVEKFFFGLEKLN-KTLDYLYDKDLLCLKIECSQETWNKIEDFINKNNL 176

Query: 222 YLVLIFRPKNN 254
            + + F   NN
Sbjct: 177 EVNITFNSINN 187
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit (RP-A) (RF-A)
           (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein)
          Length = 616

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +3

Query: 6   C*SSFFNFKTKIGFKQHLESFVFHQNYLQLIIRNIFQRTK--INPENASYLNYLWMILKC 179
           C + F NFK ++    ++  F  +Q          FQ +   I  +NA+YL  L    K 
Sbjct: 503 CDTEFPNFKYRMILSVNIADFQENQWV------TCFQESAEAILGQNAAYLGEL----KD 552

Query: 180 YQKDIMKFVKKNRMYLVLIFRPKNNLESYRIRKRIQRTVLD 302
             +   + V +N  +   IFR +  +E+Y    RI+ TV+D
Sbjct: 553 KNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMD 593
>sp|Q89AN8|DPO3A_BUCBP DNA polymerase III alpha subunit
          Length = 1077

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +2

Query: 59   GIFCFPPELSSTNHQ-KYFSENQNQS------RERILFELSMDDFKMLSERYYEICK 208
            G  CF    S   H  +Y  ++ NQ       ++R LF L +DDF ++ ++YY I K
Sbjct: 891  GCDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKK 947
>sp|P57655|ILVC_BUCAI Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 490

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 102 RNIFQRTKINPENASYLNYLWMILKCYQ--KDIMKFVKKNRMYLVLIFRPKNNLESYRIR 275
           + +++  K+  + A Y +YL+     Y   K+ +  + K+ +   L  +  NN+E YRI 
Sbjct: 403 KKLYEMNKVISDTAEYGSYLFSE-SAYPILKEFISTLNKSDLGCALSHQSVNNIELYRIN 461

Query: 276 KRIQ 287
           ++IQ
Sbjct: 462 QKIQ 465
>sp|Q92G24|YD01_RICCN Hypothetical UPF0235 protein RC1301
          Length = 105

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 15  SFFNFKTKIGFKQHLES-FVFHQN--YLQLIIRNIFQRTKINPENASYLNYLWMI 170
           +  +FK K   KQ+L S FV   N  YL+L I+ I ++ K N E  +YL   W +
Sbjct: 14  ALLSFKVKPNSKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKL 68
>sp|Q7VMC9|SYM_HAEDU Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
          Length = 684

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 77  PELSSTNHQKYFSENQNQSRERILFELSMDDFKMLSERYYEI--CKEKPD 220
           P+++ST      ++NQ Q+ E I  E+S+DDF  L  R  ++  C+  P+
Sbjct: 557 PQVAST-----MNDNQQQNIEPIAAEISIDDFAKLDLRVAKVIQCEAVPE 601
>sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B
          Length = 804

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 183 QKDIMKFVKKNRMYLVLIFRPKNNLESYRIRKRIQRTVLDGNT 311
           Q  + K  K N+   +   + KN +E+Y++   ++ T+L+ NT
Sbjct: 531 QPPLYKVTKNNKTRYI---KDKNTMENYKLSTALENTILESNT 570
>sp|P41480|VP33_NPVAC 33 kDa early protein homolog (p33)
          Length = 259

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = +3

Query: 45  FKQHLESFVFHQNYLQLIIR--NIFQRTKINPENASYLNYLWMILKCYQKDIMKFVKKNR 218
           F ++ +S++ +   L  ++R       TK+    A+YL +   ++K   KDI K+  +  
Sbjct: 8   FSRYKDSYLLYSFRLIDLLRASKSTHLTKLLSSQATYLYHFACLMK--YKDIQKYEVQQL 65

Query: 219 MYLVLIFRPKNNLESYRIRKRIQRTVLDGNTLNPAIHPQRFRTI 350
           +   +   P  +L+ +RI    + T L+  +  P      F TI
Sbjct: 66  IEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTI 109
>sp|P18963|IRA1_YEAST Inhibitory regulator protein IRA1
          Length = 3092

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 87   LQLIIRNIFQRTKINPENASYLNYLWMI 170
            LQ + +N +   K NP+++ YL YL+++
Sbjct: 2877 LQALFKNTYYERKSNPKSSDYLCYLFLL 2904
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,126,147
Number of Sequences: 369166
Number of extensions: 769284
Number of successful extensions: 2220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)